Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1006 ATGGGGAGGCAACCTTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAGTGCTGTTGGCGTGCTGTGCCAAAGCTTGCTGGCCTTAGGCGTTGCGGCAAGAGTTGCCGTCTTCGTTGGACCAATTATCTTCGCCCTGACTTGAAGAGAGGGCTCCTTACTGAAGCAGAAGAGCAGCTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTTCCAGATTACCGGGAAGGACAGACAATGAGATTAAAAATCACTGGAACACCCACATCAAGAAAAAGCTCCTTAAGATGGGTATTGATCCTGTTACTCATGAACCTCTCAATAAACAAGTTTCATCCAAGGATAGTTCAACCCCAGCAGAGCATTTGCCACAACCTGGCTCTGACCATGAGGTAAAGGAAACCGATGGGGTTATTCTCAACTCACAGGAGAACTCGAGTTCATCCCCAGCTGAAAATTCTTCGGGGGAAGAGTCTCTTTTGCTTGATAGCATTTGCAGTGATGAATCTCTAATGAACAGCTTGTGGCTGGATGAAACTCCACTGATTGATGCATTATGGGACAGTACACCTAAATCAGATAATAGTAATACTCATAATAATGACATGGGCCTGTCATCTTGGGAGGATACTTGTGCTTGGTTATTGGACTGTCAAGACTTTGGTATTCATGATTTTGGACTTAATTGTTCGAGTGAGATTGAGTCAAATGCACTCCAAACTATAGGAATGGAGGAGAAAGGGCACTAG 816 0.4547 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQVSSKDSSTPAEHLPQPGSDHEVKETDGVILNSQENSSSSPAENSSGEESLLLDSICSDESLMNSLWLDETPLIDALWDSTPKSDNSNTHNNDMGLSSWEDTCAWLLDCQDFGIHDFGLNCSSEIESNALQTIGMEEKGH* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1006 271 Gene3D - 12 67 - -
Dod02g1006 271 CDD SANT 16 61 IPR001005 -
Dod02g1006 271 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod02g1006 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod02g1006 271 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod02g1006 271 SMART sant 66 114 IPR001005 -
Dod02g1006 271 SMART sant 13 63 IPR001005 -
Dod02g1006 271 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 256 - -
Dod02g1006 271 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Dod02g1006 271 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod02g1006 271 MobiDBLite consensus disorder prediction 128 145 - -
Dod02g1006 271 CDD SANT 71 112 IPR001005 -
Dod02g1006 271 Gene3D - 71 144 - -
Dod02g1006 271 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod02g1006 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod02g1006 271 MobiDBLite consensus disorder prediction 127 154 - -
Dod02g1006 271 PANTHER PROTEIN ODORANT1-LIKE 2 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1006 Dod-Chr2 12740596 12742630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1006 1 263 MYB Transcription Factor Family AT4G12350 56.993 4.99e-102 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g1006 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1006 K09422 - gmx:100786965 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1006 02 12740596 12742630 Dod02g1006 02 12740596 12742630 ECH