Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0972 ATGGAGAGGCACAAATGCAAGCTTTGCTCAAGAACATTCGCCAATGGCAGAGCACTCGGTGGCCACATGAAGGCTCACTTGGCCACCCTCCCCCTCCCTCCCAAGCCCCATCTACAACCTCCCTCTCTCCCCGACGCTAGTGCTTCCTTCTCATCATCATATTCCTCCTCTTCCTCTTCAGAATCAGAACAAGAAGAAGAAGAAGAAACACCTGCAGTGGAACTGCAGAGAGAATCAGAGGAAAAGGCTCTGATGACTAATTATGGGTTAAGAGAGAACCCAAAGAAAAGCTTCAGGCTTGCAGATCCTGAGTTCTCTTTCCCAGCTGACACTGCAGGCTCTGTTGTGGTCCAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGGAGACGGTCCAAGCGTACCCGAAAGTCCATCGTCATGACGCATCTCCACAGCAACACCATGGAAATGGAACCCAACAATAAGAAGAAGCCTAAGCTGAGTTTCATGGAGTCACCACCAACAACAACAACTGAGCGTACAGAACCGGTTAGCTCGGTTTCCAACACTTCACCAGAGGAAGACGTTGCCAGGTGCCTCATGTTGCTCTCTAGAGACAAGTGGAATAGAAGGAGCGTTGTTGTAGCAGAAGAAGAGAAACCAAAAGGGTTGGAAGAAGAAGAAGAGATGAAGTCGGTGAAGAAGAAGGTTCGCGGGGGCAAGCAGAACCAGTGTGAGAAGTGTGGGAAAAGGTTTCGGTCTTCTGGGGCACTGGGGAGTCACAAGAGCATATGTTTCTCTGATGAAGCAGATGCTAATGATAAAGTGTTTGAATGCCCGTTTTGTTCCAAGGTGTTTGGGTCAGGTCAAGCACTTGGTGGCCACAAGAGATCTCACCTAATGATGCCATCTTCAACCTCAAATAATGCTAATAACCATTCCCATTCCCATTCAGCTAGATTGAATCTCAAAGAGAGCTTGTTCATAGATCTCAACTTGCCTGCTCCACCAGAAGAAGACAACCTTAGTGTTGTCTCTGATGCGTGA 1035 0.4841 MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPHLQPPSLPDASASFSSSYSSSSSSESEQEEEEETPAVELQRESEEKALMTNYGLRENPKKSFRLADPEFSFPADTAGSVVVQDRESETESKNPTRRRSKRTRKSIVMTHLHSNTMEMEPNNKKKPKLSFMESPPTTTTERTEPVSSVSNTSPEEDVARCLMLLSRDKWNRRSVVVAEEEKPKGLEEEEEMKSVKKKVRGGKQNQCEKCGKRFRSSGALGSHKSICFSDEADANDKVFECPFCSKVFGSGQALGGHKRSHLMMPSSTSNNANNHSHSHSARLNLKESLFIDLNLPAPPEEDNLSVVSDA* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0972 344 MobiDBLite consensus disorder prediction 44 60 - -
Dod02g0972 344 MobiDBLite consensus disorder prediction 166 188 - -
Dod02g0972 344 MobiDBLite consensus disorder prediction 30 138 - -
Dod02g0972 344 SMART c2h2final6 273 295 IPR013087 -
Dod02g0972 344 SMART c2h2final6 239 259 IPR013087 -
Dod02g0972 344 SMART c2h2final6 4 26 IPR013087 -
Dod02g0972 344 MobiDBLite consensus disorder prediction 152 188 - -
Dod02g0972 344 MobiDBLite consensus disorder prediction 289 314 - -
Dod02g0972 344 ProSitePatterns Zinc finger C2H2 type domain signature. 275 295 IPR013087 -
Dod02g0972 344 MobiDBLite consensus disorder prediction 296 313 - -
Dod02g0972 344 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Dod02g0972 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 295 IPR013087 -
Dod02g0972 344 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 344 IPR044303 GO:0006355
Dod02g0972 344 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 344 - -
Dod02g0972 344 Pfam C2H2-type zinc finger 272 295 - -
Dod02g0972 344 Pfam C2H2-type zinc finger 3 28 - -
Dod02g0972 344 Gene3D Classic Zinc Finger 212 296 - -
Dod02g0972 344 SUPERFAMILY beta-beta-alpha zinc fingers 238 295 IPR036236 -
Dod02g0972 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Dod02g0972 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 266 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0972 Dod-Chr2 12323362 12324901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0972 1 341 C2H2 Transcription Factor Family AT3G60580 32.698 5.51e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod02g0972 zf-C2H2_6 2.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0972 - - aip:107643045 327.405