Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0953 ATGACGCGGCGGTGCTCGCATTGCAGCAACAATGGCCACAACTCCAGGACGTGCCCGAACCGCGGGGTCAGGCTCTTCGGGGTCCGGTTAACCGACGGGTCGATCCGAAAGAGTGCCAGCATGGGCAATCTCACCCACTTTTCCGGGTCGGGTTCTGGGTCCCACCACGCCGCTTCCAACAACCCGGGTTCTCCCGCCGGTGACACCCCGGATCACGCCGCCGCCGCCGCAGACGGTTATGCCTCCGAGGACTTTGTTCCTGGGTCGTCCTCCACCTCCCGTGAACGAAAGAAGGGTGTCCCTTGGACTGAGGAGGAACACAGAATGTTTTTACTTGGATTGCAGAAGCTTGGCAAAGGTGATTGGCGTGGAATTGCAAAAACTTATGTCACATCAAGGACACCTACTCAAGTGGCTAGCCATGCTCAAAAATATTTCATCAGGCAAAGCAATGTCTCTAGACGGAAAAGGCGTTCAAGTCTGTTTGATATCGTTGCAGATGAATCAGCTGACACACCAATGGAACAGCAAGACTTGTTGCCAGCTAATCAGCTACAGGCTGAACCAGAAGGCAGTAAACCCTTGCCTGCACCTCCAGCCCTTGACGAAGAGTGTGAATCCATGGATTCCACTAACTTAAATGATGGGGAATCTGCCTTATTAAAGCCAGATAGCTCACAATCATCATACACGGTGCTATATCCTACGTACTATCCTCCTTTCTTCCCATTTCCTATGCACGGTTGGTCAGGATACAGTCCAGAGCCTGCTAAGAAGGAGACAAATGAAGTGCTGAAGCCAACTGCAGTGCATTCTAAATCCCCAATCAATGTTGATCTTGGCATGTCAAAACTGAGTTTAGGAGACTCCATTGGTGACTCTGGCCCCTCCTCTCTCTCCCTTAAACTCCTTGAAGGACCTTCTAGACAGTCAGCTTTTCATGCAACTCCGGGATGCAGTAGTTCAAACATGAATGGCAGTGTGATCCATGCAGTTTGA 999 0.5115 MTRRCSHCSNNGHNSRTCPNRGVRLFGVRLTDGSIRKSASMGNLTHFSGSGSGSHHAASNNPGSPAGDTPDHAAAAADGYASEDFVPGSSSTSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIAKTYVTSRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADESADTPMEQQDLLPANQLQAEPEGSKPLPAPPALDEECESMDSTNLNDGESALLKPDSSQSSYTVLYPTYYPPFFPFPMHGWSGYSPEPAKKETNEVLKPTAVHSKSPINVDLGMSKLSLGDSIGDSGPSSLSLKLLEGPSRQSAFHATPGCSSSNMNGSVIHAV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0953 332 MobiDBLite consensus disorder prediction 40 66 - -
Dod02g0953 332 MobiDBLite consensus disorder prediction 1 20 - -
Dod02g0953 332 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 97 149 IPR006447 GO:0003677
Dod02g0953 332 SMART sant 98 148 IPR001005 -
Dod02g0953 332 MobiDBLite consensus disorder prediction 211 225 - -
Dod02g0953 332 PANTHER BNAC01G21010D PROTEIN 244 325 - -
Dod02g0953 332 MobiDBLite consensus disorder prediction 1 18 - -
Dod02g0953 332 SUPERFAMILY Homeodomain-like 96 151 IPR009057 -
Dod02g0953 332 Pfam Myb-like DNA-binding domain 101 146 IPR001005 -
Dod02g0953 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 150 IPR017930 -
Dod02g0953 332 MobiDBLite consensus disorder prediction 187 225 - -
Dod02g0953 332 ProSiteProfiles Myb-like domain profile. 94 146 IPR001005 -
Dod02g0953 332 PANTHER TRANSCRIPTION FACTOR KUA1 1 216 - -
Dod02g0953 332 PANTHER TRANSCRIPTION FACTOR KUA1 244 325 - -
Dod02g0953 332 CDD SANT 101 146 IPR001005 -
Dod02g0953 332 MobiDBLite consensus disorder prediction 40 102 - -
Dod02g0953 332 Gene3D - 102 151 - -
Dod02g0953 332 PANTHER BNAC01G21010D PROTEIN 1 216 - -
Dod02g0953 332 ProSiteProfiles Zinc finger CCHC-type profile. 3 20 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0953 Dod-Chr2 12096915 12099197 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod02g0953 Myb_DNA-binding 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0953 - - ccaj:109807943 522.316