Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0950 ATGACTGCTGAGAAGGAAGATTTGGGCTTGAGTCTAAGCTTGAGCTTCTCTCACAATCCCCCACCAAATCCTCACCTCAATCTCGTTTCACTCTCTACTTATTCCTCTTCTCCATCTGCGGCCTACAACACTCAGAAACCCTCCTGGAACGAACCTTTCACTTCTTCAGATCGAGATTCCGAAACATGCAGAGGCGAAGGTCGATCGTTCCTCCGAGGAATCGACGTGAACAGGTTGCCTTCCGGTGTGGATTGCGAAGAGGAGGCGGGTGTTTCATCTCCAAACAGCACTGTCTCGAGCGTGAGCGGCAAGAGGAGCGAGAGGGAACCCAATGGGGAAGAACTCGACATGGACAGAGCCTGTTCGAGAGGGATCAGCGACGAGGAAGACGGAGAAACTTCCCGTAAGAAGCTCAGGCTCTCCAAAGACCAGTCAGCTATCCTTGAAGAGAGCTTCAAAGAACACAACACCCTCAACCCCAAGCAAAAGTCGGCACTGGCAAAGCAGCTTGGCCTTCGGGCAAGACAAGTAGAAGTCTGGTTCCAGAACAGAAGGGCAAGGACAAAGCTGAAGCAAACTGAGGTAGACTGCGAGTTCCTGAAGAGGTGCTGTGAGAATCTGACGGAAGAAAATAGGAGGCTGCAGAAGGAAGTTCAGGAGCTTAGAGCACTGAAGCTTTCCCCACAGTTCTACATGCACATGACCCCTCCCACGACACTCACCATGTGCCCTTCTTGCGAGCGTGTCGCTGTTCCGCCCTCCGCCGTTGATGCTGCCACGCGTCACCATCCCATGGCCACAGTTCACCCTCGGCCCATTCCCATTGCCCCATGGGCCGCCACAGCTGCTGCCCCTATCCCACACGGGCCCTTCGATGCCCTCCGTCCCAGGTCGTGA 897 0.5463 MTAEKEDLGLSLSLSFSHNPPPNPHLNLVSLSTYSSSPSAAYNTQKPSWNEPFTSSDRDSETCRGEGRSFLRGIDVNRLPSGVDCEEEAGVSSPNSTVSSVSGKRSEREPNGEELDMDRACSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKSALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSAVDAATRHHPMATVHPRPIPIAPWAATAAAPIPHGPFDALRPRS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0950 298 Gene3D - 139 189 - -
Dod02g0950 298 Pfam Homeobox associated leucine zipper 191 225 IPR003106 GO:0006355|GO:0043565
Dod02g0950 298 MobiDBLite consensus disorder prediction 90 105 - -
Dod02g0950 298 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981|GO:0006355
Dod02g0950 298 PANTHER - 2 286 - -
Dod02g0950 298 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677
Dod02g0950 298 SMART halz 191 234 IPR003106 GO:0006355|GO:0043565
Dod02g0950 298 Coils Coil 190 227 - -
Dod02g0950 298 MobiDBLite consensus disorder prediction 85 139 - -
Dod02g0950 298 MobiDBLite consensus disorder prediction 36 68 - -
Dod02g0950 298 MobiDBLite consensus disorder prediction 106 139 - -
Dod02g0950 298 Pfam HD-ZIP protein N terminus 3 109 IPR006712 GO:0005634
Dod02g0950 298 SUPERFAMILY Homeodomain-like 123 192 IPR009057 -
Dod02g0950 298 MobiDBLite consensus disorder prediction 1 22 - -
Dod02g0950 298 PRINTS Lambda-repressor HTH signature 171 187 IPR000047 GO:0003677
Dod02g0950 298 PRINTS Lambda-repressor HTH signature 162 171 IPR000047 GO:0003677
Dod02g0950 298 SMART HOX_1 133 195 IPR001356 GO:0003677
Dod02g0950 298 MobiDBLite consensus disorder prediction 36 56 - -
Dod02g0950 298 CDD homeodomain 135 192 IPR001356 GO:0003677
Dod02g0950 298 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 286 - -
Dod02g0950 298 Pfam Homeodomain 135 189 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0950 Dod-Chr2 12046442 12049056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0950 1 298 Homeobox Transcription Factor Family AT4G16780 66.556 1.10e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod02g0950 HD-ZIP_N 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0950 K09338 - gmx:100787231 447.973