Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod02g0940 | ATGTCTTACTCTTTTAGAGAACGGAGAAGGATAAATTATAATGAGTCTGAAGATACGCATGATATGGAGCCAGAGGATGCTAGAAGTGATGACTCCTATGGCCATGATCTATGTTGGCCTGAAAATCTGAGAAAAAGAAGGAAAAACGCAGCATCAACTTCAAGAGCTGCAGGACCTACAAGAGGTACAAGGAGTCGCCATTCATATTCCAACAGGACAGATCAACAGATTCAAAACAATGAAGCTCTCGAAACTGGACAAAGTTCAGTCATCCAATTCCAGAGAGGTTGTGTTGCACCTCCTCCACCACAAGCAGAGATGGATACCAATGTGGGAAGGGCTTCATCTTTGCACGATGAAGACCCAACAGTACCAAACATGGAGGAGAACAGTTCACCTCAACAGCCTCTGCCAGTGCATGAGGACAGCAATTCAAACGTGGAGATATGCTCATTTTTGCGCGAAGCGCCAAGAGCATGTGTGGATAATGGTTGTTCCCTTGGACATGATGCAGGGCAGAGTTCAAGAACCATGAAAGCAGCAGCAGCAGCAACATCTTTGCAAGAAAGAACGGCGGCAACTTCAGACAAGAAAACAATCCTGTCTTGGTTGATTGCGCTGGGGCTAGTTGATGAAGACGAACAGGTCTACTACATGGGTGATGGAAGGGAAAGTGCTGCCCTTACTGGGATCGTTGCCAAAGGTGGAATTCTCTGCAGCTGCTGCCAGGAAGAGATATCCGTGTGGTCGTTTGAGATGCACGCTGGCAGTGATCTCAAACAGCCTTACGGACACATCTTCCTGGCCAAAGCAGCCAGATGTCTGCAGCACCTCCTCATTGCTGCTTGGGACAAGGACACCGAGCGAAAACGCCGCGAAGCGTTTACTTTTGTGCCGAAAGAAACTTCCTTGAGCCAACATGATGATGCTTGTTCAATCTGTGGAACGGGTGGAAAGTTGATGTACTGTGGGAAATGTCCATCTGCATACCATGTACATTGCATGAATATAGGGGATATGTGTGTGTTGGTTTTGAATCAGTTTGATGCAGACACATTTGCGAGAGCTGACATAAAATATTTTGAAATGCAGAGGCCCCACCTAGATTGGTTATGTCCCTACTGCATTTGTAAATTCTGCAAGCTTGGTGGCGATAGTAAGCAATTGGTCACATGCTCCCAGTGTGAAAAGAAATTTCATTGGCAATGTTTTAGCGAACGCTCAACCTTAAAAGGATCCTCGGCCATGAGCCATTCGAGATTGTACTGCAGTCAAAGCTGTAAGGAGATCTATGAAAAATTCGACCGCGCCCTCCAAGAACCCAAAACTGATTTCTTTGATGGTTACTCTTGGAAAGTGATCCACCCAACTCGCATTTTGCCTACTAGGAACCAGTGTTTGGAAAACAATTCGAAGGTTGCAGTTGCGTATACATTGATGAATGAATCTTTCGAAACAATGGTTGACCCTTACACGGAAGTCAATCTTGTTCAGAATGTTGTGTTCAGTTGTGGCTCAAACTTAACCCGATTGAACTTCAACCGTTTCTATACGTTCGTGATGGAGCAAGATGACGCAGTCATTTGTGCAGCTTCATTGAGAATTCATGGTGAAAGGATTGGGGAAATGCCATTTGTCACCACAGACAAGGCATACCGGCGACAAGGAATTTGCGGGATGTTAATGTCGATAATTGAATCGTTCCTATGCAACCTTAAAGTCCAAAACCTGGTCATTGCAAGTGTTCCGGATACTCATGATATGTGGAAGCAGAAATACGGCTTCAACGAGCTTACAGCAGAGTTGAGAAGAGAAATCGCCAACTATAACAATTTAATGTTTCTGGGTGCTGATAGACTGTTCAAGGACTTAAGCTCATGCACAGAACAACAAGAATGTGGCAATAATGGAAAAGAAGTTGGGAATGAGAATGTCCAGGAAACACAAATGGATCAGGCAGACAATAATGGAAACGAAGTTGAGAATGAGAATGTCCAGGAAACACAACAGGATCAGGCAGATAGACCACTTCTAGATTTGAATATGGAGCCACCAGAGGAAGATCATTAG | 2070 | 0.4464 | MSYSFRERRRINYNESEDTHDMEPEDARSDDSYGHDLCWPENLRKRRKNAASTSRAAGPTRGTRSRHSYSNRTDQQIQNNEALETGQSSVIQFQRGCVAPPPPQAEMDTNVGRASSLHDEDPTVPNMEENSSPQQPLPVHEDSNSNVEICSFLREAPRACVDNGCSLGHDAGQSSRTMKAAAAATSLQERTAATSDKKTILSWLIALGLVDEDEQVYYMGDGRESAALTGIVAKGGILCSCCQEEISVWSFEMHAGSDLKQPYGHIFLAKAARCLQHLLIAAWDKDTERKRREAFTFVPKETSLSQHDDACSICGTGGKLMYCGKCPSAYHVHCMNIGDMCVLVLNQFDADTFARADIKYFEMQRPHLDWLCPYCICKFCKLGGDSKQLVTCSQCEKKFHWQCFSERSTLKGSSAMSHSRLYCSQSCKEIYEKFDRALQEPKTDFFDGYSWKVIHPTRILPTRNQCLENNSKVAVAYTLMNESFETMVDPYTEVNLVQNVVFSCGSNLTRLNFNRFYTFVMEQDDAVICAASLRIHGERIGEMPFVTTDKAYRRQGICGMLMSIIESFLCNLKVQNLVIASVPDTHDMWKQKYGFNELTAELRREIANYNNLMFLGADRLFKDLSSCTEQQECGNNGKEVGNENVQETQMDQADNNGNEVENENVQETQQDQADRPLLDLNMEPPEEDH* | 690 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod02g0940 | 689 | ProSiteProfiles | Zinc finger PHD-type profile. | 308 | 378 | IPR019787 | - | |
| Dod02g0940 | 689 | MobiDBLite | consensus disorder prediction | 631 | 689 | - | - | |
| Dod02g0940 | 689 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 514 | 597 | IPR016181 | - | |
| Dod02g0940 | 689 | PANTHER | GNAT FAMILY ACETYLTRANSFERASE | 366 | 637 | - | - | |
| Dod02g0940 | 689 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
| Dod02g0940 | 689 | Pfam | Tify domain binding domain | 230 | 279 | IPR032308 | - | |
| Dod02g0940 | 689 | ProSitePatterns | Zinc finger PHD-type signature. | 311 | 375 | IPR019786 | - | |
| Dod02g0940 | 689 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 478 | 618 | IPR000182 | GO:0016407 | |
| Dod02g0940 | 689 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 299 | 379 | IPR013083 | - | |
| Dod02g0940 | 689 | MobiDBLite | consensus disorder prediction | 102 | 142 | - | - | |
| Dod02g0940 | 689 | SMART | PHD_3 | 310 | 376 | IPR001965 | - | |
| Dod02g0940 | 689 | SMART | PHD_3 | 377 | 428 | IPR001965 | - | |
| Dod02g0940 | 689 | SUPERFAMILY | FYVE/PHD zinc finger | 376 | 408 | IPR011011 | - | |
| Dod02g0940 | 689 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - | |
| Dod02g0940 | 689 | MobiDBLite | consensus disorder prediction | 53 | 78 | - | - | |
| Dod02g0940 | 689 | MobiDBLite | consensus disorder prediction | 631 | 675 | - | - | |
| Dod02g0940 | 689 | PANTHER | PHD FINGER PROTEIN 12 | 366 | 637 | IPR042163 | GO:0003714|GO:0045892 | |
| Dod02g0940 | 689 | PANTHER | PHD FINGER PROTEIN 12 | 169 | 339 | IPR042163 | GO:0003714|GO:0045892 | |
| Dod02g0940 | 689 | MobiDBLite | consensus disorder prediction | 126 | 142 | - | - | |
| Dod02g0940 | 689 | PANTHER | GNAT FAMILY ACETYLTRANSFERASE | 169 | 339 | - | - | |
| Dod02g0940 | 689 | CDD | NAT_SF | 519 | 579 | - | - | |
| Dod02g0940 | 689 | SUPERFAMILY | FYVE/PHD zinc finger | 303 | 338 | IPR011011 | - | |
| Dod02g0940 | 689 | Coils | Coil | 650 | 670 | - | - | |
| Dod02g0940 | 689 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 380 | 430 | IPR013083 | - | |
| Dod02g0940 | 689 | Gene3D | - | 477 | 612 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod02g0940 | Dod-Chr2 | 11934112 | 11937302 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod02g0940 | 161 | 688 | PHD Transcription Factor Family | AT4G14920 | 34.249 | 5.14e-89 | 300 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod02g0940 | - | - | lang:109331897 | 468.388 |