Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0909 ATGCATTGCAATACTACTCCCATTGCGTCCAGAACTCGCTCCAGGGAAGCCCACAGGAACAAAAACGACGGGTCCGAGGTTGTCGTCGGTGTGAGTTCCGATGACGACGACGACGACGTCGTCGTTTCGGATGAAGTCCCCGCAAAAGAAGCCAGTGGCTCAGGGACCAAGAAACGTTTCGGTTCTGATGCAATGGGGAGTCTCTGCTTGGATGTTTCTGACGAAGAAGAAGAAGAAGAAGACGGTGATGATGATGAGGATGTAAAATTTTTAGGTGAGGTGACGGAGGAAGGGAAAGGTTCTGAAAATTGTGAAGATTGTGGTGGTGATGACGTGGAAGTGGAAAGAAGTGAGGACGAGAAGAATAGAAGAGAGGAAGCAGAGCTTGGAATGAAGAGGAAGAGAAAATTTGGACTCGACATTCTGGTTGACCACAGTGCGACCCAGCAGCTTTCGAGTGTTTCACAGAGGACTCGTTCGCGTTTTCGTAAGACCAAGAAACAGAAATTGGGGACTATTAGTCAACCTATATGCCTTGATGATGATGATGATGATGATGATGATGATAATGAAGAAGCACAAGAACAAGAAGAAGAAGAAGAAGAAAAAGAGGATGAGGATGAGGAAGAGGATGAGTCTCTTTCTGACTCTGACTTTGATGATGATGAGAGTGACGAGGGGAGGGATTCTGATGACGAGGAATATAGGGTTGGTGGTGGTCATCGGAAGAGAGAAAGCTATGCATGTGTTGAGAAATTGCCTAGGAAAATTGAGGAACTCATGGGGAAAAGAAAGTCCAGGAAGAAGAAATGTGTTGATGTGGTCAAGATTCTGAAGGATTCCATGTACGGAAAGGGAGGGGCACAGGTTCCTCTGGAGGCCATAGATCTTGATGATGATGATGAAGAGGAGCCTAGTTCAACCATTGTTTTGCCGTCCAACTTCTCTTTCTCGAAGGAAAAGTCAACGCCGCCACCGGAGAAACCAGGTGAGGAGGAGGAGGAGCAGGAGTTGGATGAAATTTGGGTTGAGATGGAGCGTGGCACTGATGCTACACCTCAAAGCACGGGTTCTGCTTCTGTGATTAGTTCCCTTGAAGAGGAGGGAAGAAGTTCCCACGAGGTAAAACGCAGAGGTTCTTATCATCGGAAGGGCTCTGCATTTGCAAGGAAGAAACATGAGGTCCATGATCGAATGGGTTTTGGTGAGGTCAGCGATATTCTTCTTCTTCAGGATTCTACCTATGATGATAAGGGTGAGGTGCCGAGGAATGGAAATGTTGAACCCCGAAATTCTTGTATGGATTTGCCCTTGAAGTTCAATTTTATACCTGAGGAGGAGCCACCACCTGAGAAATCTGAGCACGAGAAAGAGTTGGATGAAATTTGGGCACAGATGGAGTGTGGTCTCCATGATATGGAGCAAGAGAACTCTGCTTCTGCTGATCAGGTTGAAAATAATACTGATTGTGATGATGATAAATATCCGCTGGATGATCCTAACACACCACCCTTTTATCTCTGTCGTCGAGGAAAGCATGATCTCTTTCTTGATGACGAAACTGGACTTGTATGTAGATATTGCTTACATATCGCATTGGATATCAAGCATTGGACACCTCCCTTTCTTGAAAATCCATGTGGAAAATGTGACAGGAGGGATTATTATTACACTGTGGACCATGTGGATGACTCTGTCTTTGATGAGCTTCAGGACCGAACTTCTGGATATGATGGTTATAACCACTTTAATCGCAAGGGGACAGTGTGGGATGTAATTCCTGGAGTGCAAAATTCTATGTATCCTCATCAGTGTGAAGCCTTCGAATTTCTCTGGAATAATTTAGCTGGTGGAATCATTCTTGATAAGTTAAAAGGAAAAAATGGTTTACCCAATGGAAGTGGTTGCATTATATCTCACGCTCCTGGCACCGGGAAAACCCGGCTCACTATTGTATTCCTCCAGACTTACATGGAGTTAAATCCAACATGCACACCAATGATTATTGCCCCTAGAGGCATACTTCTTACATGGGAAGAGGAGTTTAAGACATGGAAGGTTGACATTCCCTTTCACAACTTGAACAATTTTGAATACTCTGGCAATGAAAATGAGGCAGCTATGAATCTTATCAGGAAGTATGGCCGTAATGCCTCAACTCAAGTAGCAAGGTGGTATTGTCGCATGGCCAAGTTGTATTCCTGGAAGTTAGGTAAAAGCATCTTGGGAGTTAGCTACAAATTGTTTGAGCAACTTACCCGTAGCCATGACAAGAACTTGAGGAAATTCCTTCTTGAACAGCCTGATTTGTTAGTCCTTGATGAGGGTCATACTCCCCGCAATTCTCAAAGTTGGATATGGAAATCTGTCACAGAAATCCAGACAAAGCGACGCATCATCCTATCTGGAACACCGTTCCAGAACAATTTTGATGAGCTATACAACACACTCTGCTTGGCAAGGCCTAAGTTTGCTGAAAGGAACCCAAGAAAGGAAAATAGGGGCAAATGGGGGTATCTGACCAATTCATTTGGCAAAGTTACTGATGATAGAAGAAGATTCAAGATACTGAAAGAGATCAGAGACATGATTCGTCCTTTCGTTCATGTCCACAAGGGAACCATACTGCAAGATCATCTTCATGGGTTGAGGCAGATGATAGTCATATTGAAGCCAACTGAGTTGCAGAAGCAACTCCTTGAGGATATTCGGAGAGAAAGGAAAAAACTAGACAAGGGAAAGCAGAGATATTCGAGTATTCTGAAGATAGAATATGAGGAGTCTTTAACTGCCGTTCATCCTGCTCTCTATGATCTATCTGAAGAAGGCAATAAGTTCCAAAGGATTAGATTGAACCCTGAGGAAAGTGCCAAAACGAAGTTCTTAATGGAACTTATCAGGCTTAGTGGGATTTTCAATGAAAAAGTCTTGGTCTTTAGCCAATTTATTGAGCCCTTGAAGCTTTTGACAAGCCAGCTTAAGTATCATTTTGGTTGGAGTGAAGGAAGAGAGATGCTACAAATGCATGGAAAGCTTGAAGCAAGGCATCGCCAAGCATCAATCAAAGCCTTCAACGATCCCAGGAGCAAAGTAAGGGTAATGTTAGCTTCAACCAAGGCTTGTTATGAAGGAATCAGTTTGGTTGGTGCCTCAAGGGTTGTTTTGCTTGATGTTGTGTGGAATCCTTCAGTGGAGAGGCAAGCTATAAGTCGAGCTTACAGGCTTGGGCAGAAGAAGTTTGTGTACACTTACCATCTGATCACTGTGGGGACAAGGGATGAGGAAAAATGTAGTCGTCAAGCTGAGAAAGATGAGCTATCTGAGTTGGTGTTCTATGATTCTGATAGGGCTCAGCATCGTGAAGTTCTTTCATCTGCTGAATTGAAAGATAAGTTGCTGGAACAGATGGTTCAGCAACAAAAGCTTAGACATATATTTGAGAAAGTAGCTATTAAGAAACAAAATCTATTTTGA 3474 0.4355 MHCNTTPIASRTRSREAHRNKNDGSEVVVGVSSDDDDDDVVVSDEVPAKEASGSGTKKRFGSDAMGSLCLDVSDEEEEEEDGDDDEDVKFLGEVTEEGKGSENCEDCGGDDVEVERSEDEKNRREEAELGMKRKRKFGLDILVDHSATQQLSSVSQRTRSRFRKTKKQKLGTISQPICLDDDDDDDDDDNEEAQEQEEEEEEKEDEDEEEDESLSDSDFDDDESDEGRDSDDEEYRVGGGHRKRESYACVEKLPRKIEELMGKRKSRKKKCVDVVKILKDSMYGKGGAQVPLEAIDLDDDDEEEPSSTIVLPSNFSFSKEKSTPPPEKPGEEEEEQELDEIWVEMERGTDATPQSTGSASVISSLEEEGRSSHEVKRRGSYHRKGSAFARKKHEVHDRMGFGEVSDILLLQDSTYDDKGEVPRNGNVEPRNSCMDLPLKFNFIPEEEPPPEKSEHEKELDEIWAQMECGLHDMEQENSASADQVENNTDCDDDKYPLDDPNTPPFYLCRRGKHDLFLDDETGLVCRYCLHIALDIKHWTPPFLENPCGKCDRRDYYYTVDHVDDSVFDELQDRTSGYDGYNHFNRKGTVWDVIPGVQNSMYPHQCEAFEFLWNNLAGGIILDKLKGKNGLPNGSGCIISHAPGTGKTRLTIVFLQTYMELNPTCTPMIIAPRGILLTWEEEFKTWKVDIPFHNLNNFEYSGNENEAAMNLIRKYGRNASTQVARWYCRMAKLYSWKLGKSILGVSYKLFEQLTRSHDKNLRKFLLEQPDLLVLDEGHTPRNSQSWIWKSVTEIQTKRRIILSGTPFQNNFDELYNTLCLARPKFAERNPRKENRGKWGYLTNSFGKVTDDRRRFKILKEIRDMIRPFVHVHKGTILQDHLHGLRQMIVILKPTELQKQLLEDIRRERKKLDKGKQRYSSILKIEYEESLTAVHPALYDLSEEGNKFQRIRLNPEESAKTKFLMELIRLSGIFNEKVLVFSQFIEPLKLLTSQLKYHFGWSEGREMLQMHGKLEARHRQASIKAFNDPRSKVRVMLASTKACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITVGTRDEEKCSRQAEKDELSELVFYDSDRAQHREVLSSAELKDKLLEQMVQQQKLRHIFEKVAIKKQNLF* 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0909 1157 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 627 823 IPR014001 -
Dod02g0909 1157 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 421 1153 - -
Dod02g0909 1157 MobiDBLite consensus disorder prediction 144 251 - -
Dod02g0909 1157 MobiDBLite consensus disorder prediction 283 389 - -
Dod02g0909 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 1114 IPR027417 -
Dod02g0909 1157 SMART helicmild6 987 1076 IPR001650 -
Dod02g0909 1157 MobiDBLite consensus disorder prediction 476 496 - -
Dod02g0909 1157 SMART ultradead3 596 834 IPR014001 -
Dod02g0909 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 599 867 IPR027417 -
Dod02g0909 1157 MobiDBLite consensus disorder prediction 70 91 - -
Dod02g0909 1157 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 421 1153 IPR044567 GO:0080188
Dod02g0909 1157 Coils Coil 896 916 - -
Dod02g0909 1157 CDD SF2_C_SNF 956 1087 - -
Dod02g0909 1157 MobiDBLite consensus disorder prediction 231 251 - -
Dod02g0909 1157 Pfam SNF2-related domain 632 934 IPR000330 GO:0005524|GO:0140658
Dod02g0909 1157 Pfam Helicase conserved C-terminal domain 961 1076 IPR001650 -
Dod02g0909 1157 Coils Coil 186 213 - -
Dod02g0909 1157 MobiDBLite consensus disorder prediction 178 230 - -
Dod02g0909 1157 MobiDBLite consensus disorder prediction 307 321 - -
Dod02g0909 1157 MobiDBLite consensus disorder prediction 92 106 - -
Dod02g0909 1157 Gene3D - 884 1155 IPR027417 -
Dod02g0909 1157 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 964 1123 IPR001650 -
Dod02g0909 1157 MobiDBLite consensus disorder prediction 349 366 - -
Dod02g0909 1157 MobiDBLite consensus disorder prediction 1 127 - -
Dod02g0909 1157 Gene3D - 580 864 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0909 Dod-Chr2 11714368 11718731 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0909 973 1122 RAD5 or RAD16-like Gene Family AT5G05130 37.086 2.00e-17 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod02g0909 SNF2_N 6.3e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0909 K10875 - jre:109003751 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0909 02 11714368 11718731 Dod02g0909 02 11714368 11718731 ECH