Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0885 ATGGTTTGCACTGCCAATGATTTACAGGAATGGAAAGACTTCCCAAAGGGACTTAGGGTTCTTCTCCTTGAAAGGGACACCGGTTCTGCTGCCGAGATAGGAGCAAAGCTTGAGGCCATGGACTACAATGTTTCTATCTTCAACGATGAGAATGAAGCCTTGTCAGCAGTGACAAGTAGACCAGAAGGCTTCCATGTAGCTATCGTGGAGGTGAGTGCAAGCAGCAGCCAGGATGGTTTCAAATTTCTTCAGAATGCCAAAGACTTGCCAACCATTATGACTTCAAATAATCAGTGCCTGAGCACTATGATGAAGTGCATTGCGCTCGGTGCAGTTGAGTTCCTAAGTAAACCCCTCTCTGAGGATAAACTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGCAAGTGTCCTGTCTGAGTCGCTAAAACCTGTCAAGGAGTCTGTAGAGTCCATGTTGCAGCTCAAAACAGTAAATGGACAACATGAAAGTAGAATCTCTGTAGATCTGGAGATCTTGTCCTGGTTTAGTGATAATGAGCATGAGCAGTCTGCTGGAAGTGATAAATATCCAGCTCCTTCAACCCCACAATTGAAACATGGAGCAAGGTTACTGGATGATGGTGATTACCAAGAGCAGACTAATTGCTCAACTGAGAAAGAAAGTGGAGAACATGATGGGGAATCTAAATCTGTCGAAACTTCATGTGAGAATTTGAATGCTGAAAGTACTCCTCAACTACAGGAAAGTGAAAAGACTCTGATTGAGGAGGAAGAAGAGTCTGCCAATGGTTCCAAGGGTGAGAATGCTGTTTCTCTGAATCCTCATAATAGAAAGTTTCACAGCAACACTGATGGTACTATTACATCTCCAACTAAAGCCGGTGTTCTTAGTGATTCATGTGAGAATAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACACCCGAGCTGCACAAAAAATTTTTGAAGGCAGTCGAACAGCTGGGTATTAATCAAGCCATTCCTTCTCGTATATTGGAGCTCATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATACAAAAGAGACAAATTATGCCCCAGGAAGAAGATCGAAGATGGCAAAATCAAAGAGATTCAGCACAAAAGAGCTATTGTCTGCAAAGACCAATTATGGCCTACCCTCCATATATTTCTAATCACACTCTCTCTCCAGCTCCTGTACATCCTATGTGGGGCCCTCCTAGTTATCCCATGTGGCAGTCTACAGAAAGTTGGCACTGGACACCTTTCCCAGAGGTGCATTTGGATGCATGGGGTTGCCCAGTGTTGCCACCTCCTCAAGCTCCTTACTTTTCTTACATTCAAGATATGACTGGATTGCACGATTCTAATGCAGCGGATTATATATTTGGCGTGCCACCAAGTTCATTTGAGCATTATCCGGCAGATGAAGTTGTTGACGAGGTGGTGAAGGAGGCAATGAGCAAGCCATGGCTACCCTCACCCTTAGGCCTCAAGCCTCCTTCGACAGACAGTGTGTTGGCTGAACTTTCCAAGCAAGGCATATACACCAACCCTCTTGACTGCACGGGTTCCAAACCCCCACTGACATGTATATCACAAATGACCGGTGCAATGGACCCCAGTCAATAG 1677 0.4484 MVCTANDLQEWKDFPKGLRVLLLERDTGSAAEIGAKLEAMDYNVSIFNDENEALSAVTSRPEGFHVAIVEVSASSSQDGFKFLQNAKDLPTIMTSNNQCLSTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGASVLSESLKPVKESVESMLQLKTVNGQHESRISVDLEILSWFSDNEHEQSAGSDKYPAPSTPQLKHGARLLDDGDYQEQTNCSTEKESGEHDGESKSVETSCENLNAESTPQLQESEKTLIEEEEESANGSKGENAVSLNPHNRKFHSNTDGTITSPTKAGVLSDSCENKANRKKMKVDWTPELHKKFLKAVEQLGINQAIPSRILELMKVEGLTRHNVASHLQKYRIQKRQIMPQEEDRRWQNQRDSAQKSYCLQRPIMAYPPYISNHTLSPAPVHPMWGPPSYPMWQSTESWHWTPFPEVHLDAWGCPVLPPPQAPYFSYIQDMTGLHDSNAADYIFGVPPSSFEHYPADEVVDEVVKEAMSKPWLPSPLGLKPPSTDSVLAELSKQGIYTNPLDCTGSKPPLTCISQMTGAMDPSQ* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0885 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 311 370 IPR017930 -
Dod02g0885 558 MobiDBLite consensus disorder prediction 270 304 - -
Dod02g0885 558 Pfam Myb-like DNA-binding domain 317 366 IPR001005 -
Dod02g0885 558 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Dod02g0885 558 Pfam Response regulator receiver domain 21 127 IPR001789 GO:0000160
Dod02g0885 558 MobiDBLite consensus disorder prediction 219 312 - -
Dod02g0885 558 SUPERFAMILY Homeodomain-like 313 370 IPR009057 -
Dod02g0885 558 MobiDBLite consensus disorder prediction 187 206 - -
Dod02g0885 558 MobiDBLite consensus disorder prediction 223 237 - -
Dod02g0885 558 Gene3D - 310 372 - -
Dod02g0885 558 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 541 IPR044825 GO:0003700|GO:0045893
Dod02g0885 558 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 314 368 IPR006447 GO:0003677
Dod02g0885 558 Gene3D - 18 141 - -
Dod02g0885 558 SUPERFAMILY CheY-like 16 134 IPR011006 -
Dod02g0885 558 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 541 - -
Dod02g0885 558 SMART REC_2 18 128 IPR001789 GO:0000160
Dod02g0885 558 MobiDBLite consensus disorder prediction 238 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0885 Dod-Chr2 11344139 11351444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0885 1 534 Response Regulator Gene Family AT4G18020 49.020 1.14e-141 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dod02g0885 Response_reg 2.3e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0885 - - gmx:100784905 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0885 02 11344139 11351444 Dod05g1260 05 35692985 35699025 PCT