Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod02g0885 | ATGGTTTGCACTGCCAATGATTTACAGGAATGGAAAGACTTCCCAAAGGGACTTAGGGTTCTTCTCCTTGAAAGGGACACCGGTTCTGCTGCCGAGATAGGAGCAAAGCTTGAGGCCATGGACTACAATGTTTCTATCTTCAACGATGAGAATGAAGCCTTGTCAGCAGTGACAAGTAGACCAGAAGGCTTCCATGTAGCTATCGTGGAGGTGAGTGCAAGCAGCAGCCAGGATGGTTTCAAATTTCTTCAGAATGCCAAAGACTTGCCAACCATTATGACTTCAAATAATCAGTGCCTGAGCACTATGATGAAGTGCATTGCGCTCGGTGCAGTTGAGTTCCTAAGTAAACCCCTCTCTGAGGATAAACTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGCAAGTGTCCTGTCTGAGTCGCTAAAACCTGTCAAGGAGTCTGTAGAGTCCATGTTGCAGCTCAAAACAGTAAATGGACAACATGAAAGTAGAATCTCTGTAGATCTGGAGATCTTGTCCTGGTTTAGTGATAATGAGCATGAGCAGTCTGCTGGAAGTGATAAATATCCAGCTCCTTCAACCCCACAATTGAAACATGGAGCAAGGTTACTGGATGATGGTGATTACCAAGAGCAGACTAATTGCTCAACTGAGAAAGAAAGTGGAGAACATGATGGGGAATCTAAATCTGTCGAAACTTCATGTGAGAATTTGAATGCTGAAAGTACTCCTCAACTACAGGAAAGTGAAAAGACTCTGATTGAGGAGGAAGAAGAGTCTGCCAATGGTTCCAAGGGTGAGAATGCTGTTTCTCTGAATCCTCATAATAGAAAGTTTCACAGCAACACTGATGGTACTATTACATCTCCAACTAAAGCCGGTGTTCTTAGTGATTCATGTGAGAATAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACACCCGAGCTGCACAAAAAATTTTTGAAGGCAGTCGAACAGCTGGGTATTAATCAAGCCATTCCTTCTCGTATATTGGAGCTCATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATACAAAAGAGACAAATTATGCCCCAGGAAGAAGATCGAAGATGGCAAAATCAAAGAGATTCAGCACAAAAGAGCTATTGTCTGCAAAGACCAATTATGGCCTACCCTCCATATATTTCTAATCACACTCTCTCTCCAGCTCCTGTACATCCTATGTGGGGCCCTCCTAGTTATCCCATGTGGCAGTCTACAGAAAGTTGGCACTGGACACCTTTCCCAGAGGTGCATTTGGATGCATGGGGTTGCCCAGTGTTGCCACCTCCTCAAGCTCCTTACTTTTCTTACATTCAAGATATGACTGGATTGCACGATTCTAATGCAGCGGATTATATATTTGGCGTGCCACCAAGTTCATTTGAGCATTATCCGGCAGATGAAGTTGTTGACGAGGTGGTGAAGGAGGCAATGAGCAAGCCATGGCTACCCTCACCCTTAGGCCTCAAGCCTCCTTCGACAGACAGTGTGTTGGCTGAACTTTCCAAGCAAGGCATATACACCAACCCTCTTGACTGCACGGGTTCCAAACCCCCACTGACATGTATATCACAAATGACCGGTGCAATGGACCCCAGTCAATAG | 1677 | 0.4484 | MVCTANDLQEWKDFPKGLRVLLLERDTGSAAEIGAKLEAMDYNVSIFNDENEALSAVTSRPEGFHVAIVEVSASSSQDGFKFLQNAKDLPTIMTSNNQCLSTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGASVLSESLKPVKESVESMLQLKTVNGQHESRISVDLEILSWFSDNEHEQSAGSDKYPAPSTPQLKHGARLLDDGDYQEQTNCSTEKESGEHDGESKSVETSCENLNAESTPQLQESEKTLIEEEEESANGSKGENAVSLNPHNRKFHSNTDGTITSPTKAGVLSDSCENKANRKKMKVDWTPELHKKFLKAVEQLGINQAIPSRILELMKVEGLTRHNVASHLQKYRIQKRQIMPQEEDRRWQNQRDSAQKSYCLQRPIMAYPPYISNHTLSPAPVHPMWGPPSYPMWQSTESWHWTPFPEVHLDAWGCPVLPPPQAPYFSYIQDMTGLHDSNAADYIFGVPPSSFEHYPADEVVDEVVKEAMSKPWLPSPLGLKPPSTDSVLAELSKQGIYTNPLDCTGSKPPLTCISQMTGAMDPSQ* | 559 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod02g0885 | 558 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 311 | 370 | IPR017930 | - | |
Dod02g0885 | 558 | MobiDBLite | consensus disorder prediction | 270 | 304 | - | - | |
Dod02g0885 | 558 | Pfam | Myb-like DNA-binding domain | 317 | 366 | IPR001005 | - | |
Dod02g0885 | 558 | ProSiteProfiles | Response regulatory domain profile. | 19 | 132 | IPR001789 | GO:0000160 | |
Dod02g0885 | 558 | Pfam | Response regulator receiver domain | 21 | 127 | IPR001789 | GO:0000160 | |
Dod02g0885 | 558 | MobiDBLite | consensus disorder prediction | 219 | 312 | - | - | |
Dod02g0885 | 558 | SUPERFAMILY | Homeodomain-like | 313 | 370 | IPR009057 | - | |
Dod02g0885 | 558 | MobiDBLite | consensus disorder prediction | 187 | 206 | - | - | |
Dod02g0885 | 558 | MobiDBLite | consensus disorder prediction | 223 | 237 | - | - | |
Dod02g0885 | 558 | Gene3D | - | 310 | 372 | - | - | |
Dod02g0885 | 558 | PANTHER | TRANSCRIPTION ACTIVATOR GLK1 | 1 | 541 | IPR044825 | GO:0003700|GO:0045893 | |
Dod02g0885 | 558 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 314 | 368 | IPR006447 | GO:0003677 | |
Dod02g0885 | 558 | Gene3D | - | 18 | 141 | - | - | |
Dod02g0885 | 558 | SUPERFAMILY | CheY-like | 16 | 134 | IPR011006 | - | |
Dod02g0885 | 558 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN | 1 | 541 | - | - | |
Dod02g0885 | 558 | SMART | REC_2 | 18 | 128 | IPR001789 | GO:0000160 | |
Dod02g0885 | 558 | MobiDBLite | consensus disorder prediction | 238 | 255 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod02g0885 | Dod-Chr2 | 11344139 | 11351444 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod02g0885 | 1 | 534 | Response Regulator Gene Family | AT4G18020 | 49.020 | 1.14e-141 | 418 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-ARR-B | Dod02g0885 | Response_reg | 2.3e-07 | CL0304 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod02g0885 | - | - | gmx:100784905 | 833.172 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Dod02g0885 | 02 | 11344139 | 11351444 | Dod05g1260 | 05 | 35692985 | 35699025 | PCT |