Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod02g0868 | ATGCCGGTTCCACTTGCTCCCTACCCTACACCCTCGCTTCCATATACGCCTCTAGCAAATGGTGCACAGAGCCAACTTGTCTGTTCCGGGTGCAGAAACCTTCTCCTCTATCCAGTTGGAGCAACCTCTGTGTGCTGTGCCGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGCTGTCACACTTTACTCATGTACATTCGTGGAGCGACAAGTGTGCAATGCTCTTGTTGCCACACGGTCAGTCTAGCTCTGGAAGCAAATCAGGTGGCACATGTTAACTGTGGGAACTGTAGGATGCTACTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCTGTCTGCAGTTTTGTAACATCAGTTGGGGCCTCAGCAAGCACCACTGAGCTGAAATTCAACACCTAA | 438 | 0.5046 | MPVPLAPYPTPSLPYTPLANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVSLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCSFVTSVGASASTTELKFNT* | 146 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod02g0868 | 145 | PANTHER | PROTEIN LSD1 | 1 | 140 | IPR040319 | - | |
Dod02g0868 | 145 | SUPERFAMILY | Multiheme cytochromes | 28 | 126 | IPR036280 | - | |
Dod02g0868 | 145 | PANTHER | PROTEIN LOL1 | 1 | 140 | - | - | |
Dod02g0868 | 145 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 25 | 55 | IPR005735 | - | |
Dod02g0868 | 145 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 102 | 131 | IPR005735 | - | |
Dod02g0868 | 145 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 64 | 93 | IPR005735 | - | |
Dod02g0868 | 145 | Pfam | LSD1 zinc finger | 105 | 129 | IPR005735 | - | |
Dod02g0868 | 145 | Pfam | LSD1 zinc finger | 67 | 91 | IPR005735 | - | |
Dod02g0868 | 145 | Pfam | LSD1 zinc finger | 28 | 52 | IPR005735 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod02g0868 | Dod-Chr2 | 11165516 | 11168349 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-LSD | Dod02g0868 | zf-LSD1 | 8.9e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod02g0868 | - | - | cit:102618163 | 269.24 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Dod02g0868 | 02 | 11165516 | 11168349 | Dod05g1235 | 05 | 35142337 | 35144962 | PCT |