Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0855 ATGAATTTCTGTGGATGGTTTAATAGGGGCTTTTTTTTGTATATTTTTCAACTTTTGCAGGAAATGGAAGGTTACGATTTGTTTCCACAATGCCACCTGAACTTGCTCGATGATGTAGAATTCCTTTCTCATGACATAGTGATGAGTGCCCCACCGAGAGAGCCTAATTTGTCTTCCACAGATGAAACGAGTTTCGAGAGGCCCACCAAGCAGCTGAAAACTAATAGCTGTAGTTGGAACTCATCCACCATCACCGATCACATTTCACCAGTTCTTTCACCTTCCTCCTCTCCTCTTTCTTCTTCTCCCACTTCCCAGATTCTGTCTTTTGATACCTCAAACTCTTCCCCTGCCACCAACACCACTACCACCCAGTTTTGTGGCTTTGATTGTACCTTAAACCCGAAACAGAACGGGGCTGTCTCAGTGTCGCTGCCACAACTAGGAAACATGCACTCTTCGGCCCAAACCCGTAAAGGGTCATCAGAAAATAAAACCTTTGAAACAAGAAAACCTCAAGGACAAGGTCCTAAGAGACCCCTGGCTCACGCTCAGGATCACATCATTGCGGAGAGAAAGCGAAGAGAGAAGCTCAGCCAAAGCTTAATTGCTCTTGCTGCTCTTATTCCAGGCTTAAAGAAGATGGACAAGGCTTCGGTACTCGGGGACGCGGTCAAGTACGTGAAAGAGATGCAAGAGCGTTTGAGAGTGCTGGAAGAAGAGACCAACAAGAGATCGCTAGAGTGTGTGGTGATGGTTAACAAGCCACAGCTCAGCAGCGACGATGATTCCTCCTCGTGTGATGGTGAGAGCTTCGAAGCTGCAGCCGGTGGTGGTGGAGGTGGCGAAGCACTCCCCCATGTGGAAGCTAGAGTGGCAGCGAAGGAGGTGCTCCTTCGGATCCACTGCCAGAAGCAAAAGGGCCTTTATGTCAAATTACTCGCCGAGATTCAAAGCCTTCAACTCTCTGTTGTCAACAGCAGTGTCCTACCTTTTGGGGATTCTGTTCTAGACATAACCATTGTTGCTCAGATGGGCACGGATTACAACTTGACCATAAAAGATCTTGTGAGGAACCTACGCGTGGCTACATTGAAGTCCATCTCGTCATAG 1113 0.4771 MNFCGWFNRGFFLYIFQLLQEMEGYDLFPQCHLNLLDDVEFLSHDIVMSAPPREPNLSSTDETSFERPTKQLKTNSCSWNSSTITDHISPVLSPSSSPLSSSPTSQILSFDTSNSSPATNTTTTQFCGFDCTLNPKQNGAVSVSLPQLGNMHSSAQTRKGSSENKTFETRKPQGQGPKRPLAHAQDHIIAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAVKYVKEMQERLRVLEEETNKRSLECVVMVNKPQLSSDDDSSSCDGESFEAAAGGGGGGEALPHVEARVAAKEVLLRIHCQKQKGLYVKLLAEIQSLQLSVVNSSVLPFGDSVLDITIVAQMGTDYNLTIKDLVRNLRVATLKSISS* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0855 370 Pfam Helix-loop-helix DNA-binding domain 186 232 IPR011598 GO:0046983
Dod02g0855 370 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 23 368 - -
Dod02g0855 370 MobiDBLite consensus disorder prediction 52 78 - -
Dod02g0855 370 Coils Coil 221 248 - -
Dod02g0855 370 MobiDBLite consensus disorder prediction 148 184 - -
Dod02g0855 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 249 IPR036638 GO:0046983
Dod02g0855 370 MobiDBLite consensus disorder prediction 257 280 - -
Dod02g0855 370 Gene3D - 180 246 IPR036638 GO:0046983
Dod02g0855 370 MobiDBLite consensus disorder prediction 90 118 - -
Dod02g0855 370 MobiDBLite consensus disorder prediction 53 78 - -
Dod02g0855 370 PANTHER BHLH TRANSCRIPTION FACTOR 23 368 - -
Dod02g0855 370 SMART finulus 188 237 IPR011598 GO:0046983
Dod02g0855 370 CDD bHLH_AtNAI1_like 183 255 - -
Dod02g0855 370 MobiDBLite consensus disorder prediction 148 171 - -
Dod02g0855 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0855 Dod-Chr2 10961074 10963903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0855 20 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.467 1.43e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod02g0855 HLH 5.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0855 - - gmx:100788128 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0855 02 10961074 10963903 Dod05g1220 05 34738330 34740892 PCT