Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0854 ATGACATCAACGGAAGAACCGTGGACAACTTGGCTGTGTGATTTGGAAGCAGAGGACTACAGTTTGATCAACCAGCCAGACATAAATGGGGTTGATGGAACTTTACCATCTCACAATGATATAGCACCTAAGCCAGAAGAGAGTTCAAAACCCCAGCGATCTTTCTCCACCGACAGCACCGTGAGCAATTCCTCAGGGGATGATAACAGCAGCTTTGAGAGGCCTGCCAAGACACTCAAGACAAGCACTTCCAACAACTCTGCTGACTATGACACTACTACCCCTCCCTCCTCCTACATTCTGTCCTTCAACAGTGCCAATCCGGCACCAATGTTGATCAACACTGATTCGGCCTTTAGGCCAAAAGGCACCACCAACAAGGTTGCGAATCATGGGAAATCTTTCCCCGCAAAAGGGTCATTGGAAAATCAAAAGAAGGAGCCAAGACGCAACAATCAGAAGACTGGCTCAGCTGGCAGATCTCCCCAACACGCTCATGATCACATAATTGCTGAGAGAATGAGGAGAGAAAAGATTAGTCAGCAGTTCATAGCTCTTTCGGCCCTTATTCCTGGCCTCAAAAAGATGGATAAGGCCACTGTGCTGGGGGACGCTGTAAAGTATGTGAAGCAGCTCCAAGAGCAAGTGAAAGTGTTGGAAGAGCAGGCCAAAAGGAAAAGCGTGGAATCCGTGGTGTATGTTGAGAAATCTCAGCTCTCTGCAGACGAAGATGTCTCAGACACCTCGTCAAATTCAGGCGACGGAAATTCCTATGAGATCTCAAAAATGAATCGGTCTCTGCCAGAAGTGGAGGCAAGGGTGTCAGAGAAGAACGTGCTGATCCGAATCCACTGCGAGAATCAAAAGGGTGTGTTCATGTACATCCTCAAGGAGATAGAGAAACTCAATCTATCGGTGATCAACAGCAGTGCCTTGCAATTCGGGACCTCCATCGTCGACATAACCATCACTGCCGAGGTACATTCATTCTTTTGCTTCATTACTGATTATTACCGTTTTAACTTTCAAATAATTAATTACTCCATTGTATCAATTAAATTAAACTAA 1068 0.4588 MTSTEEPWTTWLCDLEAEDYSLINQPDINGVDGTLPSHNDIAPKPEESSKPQRSFSTDSTVSNSSGDDNSSFERPAKTLKTSTSNNSADYDTTTPPSSYILSFNSANPAPMLINTDSAFRPKGTTNKVANHGKSFPAKGSLENQKKEPRRNNQKTGSAGRSPQHAHDHIIAERMRREKISQQFIALSALIPGLKKMDKATVLGDAVKYVKQLQEQVKVLEEQAKRKSVESVVYVEKSQLSADEDVSDTSSNSGDGNSYEISKMNRSLPEVEARVSEKNVLIRIHCENQKGVFMYILKEIEKLNLSVINSSALQFGTSIVDITITAEVHSFFCFITDYYRFNFQIINYSIVSIKLN* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0854 355 MobiDBLite consensus disorder prediction 114 131 - -
Dod02g0854 355 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 3 331 - -
Dod02g0854 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 229 IPR036638 GO:0046983
Dod02g0854 355 MobiDBLite consensus disorder prediction 114 166 - -
Dod02g0854 355 MobiDBLite consensus disorder prediction 49 93 - -
Dod02g0854 355 Coils Coil 202 229 - -
Dod02g0854 355 SMART finulus 169 218 IPR011598 GO:0046983
Dod02g0854 355 MobiDBLite consensus disorder prediction 24 93 - -
Dod02g0854 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Dod02g0854 355 Coils Coil 354 355 - -
Dod02g0854 355 CDD bHLH_AtNAI1_like 164 237 - -
Dod02g0854 355 PANTHER BHLH TRANSCRIPTION FACTOR 3 331 - -
Dod02g0854 355 Pfam Helix-loop-helix DNA-binding domain 168 213 IPR011598 GO:0046983
Dod02g0854 355 Gene3D - 148 228 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0854 Dod-Chr2 10937155 10940181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0854 9 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.823 6.92e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod02g0854 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0854 - - lang:109348843 349.362