Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0853 ATGATGGAAATTGCGTCCATCAACTATTTGGCTGAACTTGTAATGGAGGATCCAACCTTTCATGAGTACCCAATGGATTGTTTTGCATACACGCTTGATGAGCTTGAGTTGCAGTCTTTGTCAGGGTCCCCAGAGTGCTATTCCTCTAATCCCTATTTCATCTCTGAAAGCAAACCAAACTGTTTCCCCGATGAAAATCTTGATCATCAGTTCGTTGCCCCACCAAGGCCAACCAAGAAACTCAAGACATTCGAAACGGTGCCAGCTCCCAAGGCTTCTACCCCTCCATCATCCCAACTTATATCATTTGAGCACTTCAATACTGCACCATCATCAGTTGCTCCAATGAAATTCGGCAACCTGATATGTGAAGTGAAGAAGCCTAAAGTGAAGAACGGGTGTGGTGAGAACCTTGATTTTTCAACTTTGATTTCTCAAGGTGCGTATGAGGACGGAATTTTATTCAATTATGACGATAGAAAGTACAAGGCTGCAGCTGCAGCTAGGAACCCAGCCCAAGCTCAAGAGCACGTAATGGCCGAAAGAAAACGAAGGGAAAAGCTCAGTCAGAGGTTCGTTGCACTTTCAGCCATGGTTCCTGGCCTCAAGAAGATGGATAAGGCTTCAATCTTGGGAGATGCTATCAAGTATGCGAAACAACTGCAGGAACGCTTGCAGGATCTGGAAGAGCAAGCAACCAAGAAGAGAGTTGAATCGGCAGTGCTGGTAAAGAGATCTTTTATCTTCGTTGACGATGAAAGCTCATCATCAGATGAAAATTCTAATAGCCACTGTGAACAGTCACTTCCCGAAATTCAAGCAAGAGTTTGTGGGAAAGACGTACTCATCAGAATCCTCTGCGACAAACACAGCGGACGTGAGGCTGCAATACTCAGCGAATTAGAAAAGCACAATCTCACTATACACACTAGCAGCTGCTTGCCCTTCGGGAATAACACCCTTGATGTAACAATTGTTGCTCAGATGAACCAGGAACACTGCATGACTGTAAAGGATCTCCTAGGAAGCCTACGGCTAGCTTTGACACAGTTCTTAAGCTAG 1062 0.4492 MMEIASINYLAELVMEDPTFHEYPMDCFAYTLDELELQSLSGSPECYSSNPYFISESKPNCFPDENLDHQFVAPPRPTKKLKTFETVPAPKASTPPSSQLISFEHFNTAPSSVAPMKFGNLICEVKKPKVKNGCGENLDFSTLISQGAYEDGILFNYDDRKYKAAAAARNPAQAQEHVMAERKRREKLSQRFVALSAMVPGLKKMDKASILGDAIKYAKQLQERLQDLEEQATKKRVESAVLVKRSFIFVDDESSSSDENSNSHCEQSLPEIQARVCGKDVLIRILCDKHSGREAAILSELEKHNLTIHTSSCLPFGNNTLDVTIVAQMNQEHCMTVKDLLGSLRLALTQFLS* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0853 353 CDD bHLH_AtNAI1_like 175 246 - -
Dod02g0853 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 242 IPR036638 GO:0046983
Dod02g0853 353 PANTHER BHLH TRANSCRIPTION FACTOR 1 351 - -
Dod02g0853 353 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 351 - -
Dod02g0853 353 Coils Coil 211 238 - -
Dod02g0853 353 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983
Dod02g0853 353 SMART finulus 178 227 IPR011598 GO:0046983
Dod02g0853 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Dod02g0853 353 Gene3D - 164 237 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0853 Dod-Chr2 10922252 10925246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0853 163 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 51.795 3.18e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod02g0853 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0853 - - gmx:100791810 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0853 02 10922252 10925246 Dod02g0853 02 10922252 10925246 ECH