Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0851 ATGACAATGACACATAGCAGAAGCATTGGTTCACAAAGTGGCCCTTTGAATGCATTGGTGTTGAAGCATGTTAGGGGTAAAACAAATGAAAAGAATAAAGATGTCACCACACTTGATTGGAATGGGGAGGGGACACTACTGGCTACTGGCTCATATGATGGGCAAGCAAGAATTTGGACCCCTAATGGTGATCTAAAGAGTACATTAAGCAAACACAAGGGACCCATATTCTCTTTGAAGTGGAATAAGAAAGGTGATTTTCTTCTTACTAGAAGCTGTGATAAAACTGTAATTGTATGGGATGTAAAAGAAGAGGAATGGAAACAACAATTCAAGTTTCATTCAGGTCCAACACTAGATGTTGACTGGCGCAACAATGTGTCATTTGCAACAAGCTCCACTGACATGATGATATATGTTTGCAAGATTGGTGAAAACCGCCCTATAAAGACTTTTGCTGGGCATCAAGTTTGTATGTCTGACCATGTTTTGAAGTATTGTGGTATAGACTGA 513 0.3957 MTMTHSRSIGSQSGPLNALVLKHVRGKTNEKNKDVTTLDWNGEGTLLATGSYDGQARIWTPNGDLKSTLSKHKGPIFSLKWNKKGDFLLTRSCDKTVIVWDVKEEEWKQQFKFHSGPTLDVDWRNNVSFATSSTDMMIYVCKIGENRPIKTFAGHQVCMSDHVLKYCGID* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0851 170 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 69 106 - -
Dod02g0851 170 Pfam WD domain, G-beta repeat 30 59 IPR001680 GO:0005515
Dod02g0851 170 Pfam WD domain, G-beta repeat 65 101 IPR001680 GO:0005515
Dod02g0851 170 ProSiteProfiles Trp-Asp (WD) repeats profile. 28 59 IPR001680 GO:0005515
Dod02g0851 170 SMART WD40_4 17 60 IPR001680 GO:0005515
Dod02g0851 170 SMART WD40_4 62 101 IPR001680 GO:0005515
Dod02g0851 170 SMART WD40_4 104 142 IPR001680 GO:0005515
Dod02g0851 170 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 28 59 - -
Dod02g0851 170 ProSiteProfiles Trp-Asp (WD) repeats profile. 69 110 IPR001680 GO:0005515
Dod02g0851 170 PANTHER F-BOX-LIKE/WD REPEAT TBL1XR1-LIKE PROTEIN 9 157 - -
Dod02g0851 170 Gene3D - 2 163 IPR015943 GO:0005515
Dod02g0851 170 PANTHER WD40 REPEAT PROTEIN 9 157 IPR045183 GO:0003714|GO:0016575
Dod02g0851 170 SUPERFAMILY WD40 repeat-like 26 156 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0851 Dod-Chr2 10903795 10904953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0851 33 146 Eukaryotic Initiation Factors Gene Family AT2G46280 30.579 4.93e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0851 K04508 - cit:102623204 286.189