Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0828 ATGGGGAGGGCTCCTTGCTGTGACAAAGCCAACGTGAAGAAAGGGCCATGGTCTCCTGAAGAAGATGCCAAACTCAAGGCTTATATCGAGCAGCACGGTACCGGAGGCAACTGGATAGCTTTGCCCCAGAAGATAGGCCTTAAGAGATGTGGGAAAAGCTGTCGTCTGAGATGGCTGAATTATCTTCGCCCAAACATCAAACATGGGGGCTTCTCTGAAGAAGAAGACAACATAATCTGCAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCTATTATAGCAGCACAATTACCAGGGCGAACAGATAATGACATAAAGAACTACTGGAACACGAGGCTGAAGAAGAAGCTCCTTGGAAAGCAAAGGAAGGAGCAACAGGCTCAAGCACGCCGAGTCAGCAGCCTAAAGCATCAAGAGATGATGAAGAGAGAACCCCAAGACCTGGTGGTGATGGCTGCTTCTTCTTCTTCTTCAGGAGGATTCATCACCCAACAAACTCCATATTGGCCTGCAGAGCATTGTGTGCCAGTAATACCAAATAATGCTTCCAATAATATCATCCAAGACTATGATCATCTCATCAGCAACCAAACATCATCATCCCTCAGGAACCTGCTAAACGAACTAGGGGGAATTATTAGATTCCCCCATGATCATCATCAACCACCATCATACGGTACTACTGCCATTAATTCCCATGAGTCATGTGAGATATCCTTTCCACAAGACCAGGTTTATCCAACAACAGTGATAAACTCAGTGGCCATGGTGAGTACCGATGCAAACAATAATAATGGTGGCAATTCTCATCATCAGCCTTCCATAATACTTCAAGGGTATGAAAACTTCCCAAGTGATGATGATTTGAGTCATCTGGTTTGTGTGAACCCGCAACAAATAGAAGGATCAATGCAAGGCTTCTATGGAATGGAATCCATGGACATGGCCGGTGGTAGCACCAACACGACCTCAACGGATCAAAGCACTAGTTGGGGAGACATGAGCTCTCTGGTTTACTCACCTAATTTGGTTTCTGACTATGAAGGTGGTTGCCGACAAGGAATTCCTCAAGATGCTGCTTTCGAGGATTCTAGGTACTTTGGAATTCAAATGCAATAA 1119 0.4522 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQARRVSSLKHQEMMKREPQDLVVMAASSSSSGGFITQQTPYWPAEHCVPVIPNNASNNIIQDYDHLISNQTSSSLRNLLNELGGIIRFPHDHHQPPSYGTTAINSHESCEISFPQDQVYPTTVINSVAMVSTDANNNNGGNSHHQPSIILQGYENFPSDDDLSHLVCVNPQQIEGSMQGFYGMESMDMAGGSTNTTSTDQSTSWGDMSSLVYSPNLVSDYEGGCRQGIPQDAAFEDSRYFGIQMQ* 373
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0828 372 CDD SANT 71 113 IPR001005 -
Dod02g0828 372 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Dod02g0828 372 Gene3D - 7 68 - -
Dod02g0828 372 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 355 - -
Dod02g0828 372 Gene3D - 70 144 - -
Dod02g0828 372 SMART sant 13 64 IPR001005 -
Dod02g0828 372 SMART sant 67 115 IPR001005 -
Dod02g0828 372 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Dod02g0828 372 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Dod02g0828 372 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Dod02g0828 372 CDD SANT 16 62 IPR001005 -
Dod02g0828 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dod02g0828 372 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dod02g0828 372 MobiDBLite consensus disorder prediction 119 138 - -
Dod02g0828 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Dod02g0828 372 PANTHER OS09G0431300 PROTEIN 1 355 - -
Dod02g0828 372 MobiDBLite consensus disorder prediction 120 138 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dod02g0828 Dod-Chr2 10703166 10705102 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0828 1 340 MYB Transcription Factor Family AT3G49690 49.275 2.42e-89 270
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g0828 Myb_DNA-binding 4.6e-14 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0828 K09422 - gmx:106795158 426.402