Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0820 ATGCCGATGTTTCAGCCTTGTAAAAGGGACATGGTTGCTGGGTTCGAGGGTGGTGGTGACGGCCAGATTCTAGATCTGGACACCGCTGTGAAAGACGGTGTCCTCGGTGGTGTCGAAGGTGGTGTCGTGGGAACTGGTGGTGCAGGTGAGAAATTGGATCTGAGGAAGATGATTGAGGAGCTTGACTTGTCCGAGGTTCCAACAGTGTTCATTTGCCCAATATCCCTTGAACCAATGCAAGACCCCGTGACCCTTTGCACCGGCCAAACCTACGAGAGGTCCAACATCCTCAAATGGTTCAACTTGGGGCACTTCACTTGCCCTACCACTATGCAGGAGCTTTGGGATGACTCTGTCACTCCAAACACCACCCTGTACCGCCTCATATACACTTGGTTCTCTCAGAAGTACCTCCTGATGAAGAAGAGGTCCGAGGATGTTCAAGGTAGGGCTTCAGAGCTTCTTGAGACACTGAAGAAGGTTAAGGGTCAGGCTCGTGTTCAGGCACTCAAGGAGCTTCACCAGGTTGTGGCTGCTCATGCTACTGCCCGCAAGACAGTGATTGAAGAAGGTGGTGTCTCTGTCATATCCTCTCTGCTTGGCCCTTTTACTTCCCATGCTGTTGGCTCTGAGGTCATTGGTATCCTTGTGAGCTTGACCCTTGATTCCGAATCCAAGAAGAATCTTATGCAGCCTGCTAAGATTTCCTTGATGGTGGATATCTTGAATGAGGGTTCTATTGAGACTAAGATCAATTGCACTAGGCTGATTGAGTCTTTGATTGAGGAGAAGGATTTCCGGTCCGAGGTTATCTCGAGCCATAGCCTCTTGGTTGGGGTGATGAGGCTTGTGAAGGATAAGAGGCACAGCAATGGAATATGTCCTGGGCTAAGCCTCCTAAGGGCAATCTGCTTGCATAAGGAAGTTAGGCATTTGCTGGTGAGCATTGGTGCTGTTTCTCAATTGGTTGAATTGTTGTCTGGTTTGGAGCCTGATTGTTTGGAATTAGCACTTTGTGTTTTGGATGCATTGGCATCTATACCTGAAGGCAGGGTGGCTTTAAAGGATTGTTCTAACACCATTCCTATCATGGTGAAACTGTTGATGAGGATCTCAGAGAACTGCACCCAGTATGCATTGTCAATCCTGTGGTCTGTCTGTAAGCTTGCGCCGGAGGAGTGCTCGTCGATTGCGCTGGAAGCAGGCCTTGCCGCAAAACTCCTTCTTGTGATTCAAAGTGGTTGCAATCCTATATTGAAGCAACAGTCTGCTGAGCTTTTGAAGCTGTGTAGTTTAAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTGACCAGAACTATCCAATGA 1353 0.4819 MPMFQPCKRDMVAGFEGGGDGQILDLDTAVKDGVLGGVEGGVVGTGGAGEKLDLRKMIEELDLSEVPTVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHFTCPTTMQELWDDSVTPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELLETLKKVKGQARVQALKELHQVVAAHATARKTVIEEGGVSVISSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLIESLIEEKDFRSEVISSHSLLVGVMRLVKDKRHSNGICPGLSLLRAICLHKEVRHLLVSIGAVSQLVELLSGLEPDCLELALCVLDALASIPEGRVALKDCSNTIPIMVKLLMRISENCTQYALSILWSVCKLAPEECSSIALEAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0820 450 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
Dod02g0820 450 Gene3D - 139 445 IPR011989 -
Dod02g0820 450 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Dod02g0820 450 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 38 449 - -
Dod02g0820 450 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Dod02g0820 450 PANTHER WDSAM1 PROTEIN 38 449 IPR045185 GO:0061630
Dod02g0820 450 SUPERFAMILY ARM repeat 236 436 IPR016024 -
Dod02g0820 450 SUPERFAMILY ARM repeat 154 273 IPR016024 -
Dod02g0820 450 SUPERFAMILY RING/U-box 60 136 - -
Dod02g0820 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
Dod02g0820 450 CDD RING-Ubox_PUB 70 112 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0820 Dod-Chr2 10578974 10582174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0820 1 450 U-box Gene Family AT3G49810 77.556 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0820 - - gmx:100779827 806.979