Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0811 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCGCTGAAGGCTGGAGTAGTCAAACACGGGCCTGGAAAATGGCGCACTATACTTACAGATCCAGAGTTCAGTTCCGTGTTGTGCATGCGTTCGAATGTAGATCTCAAGGACAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCAGGCAGAAGGCAAAGCTTGCCCTTAAAAAGAACCTACCAACCCCCAAAATCGACAATAACCACCTGGCCTTAAGTACTGTAGTTCAACGTGATGAAGTTGCTGATACTAAGCCTCCAGCAGTTTCTGGTGGAGCATTGCAATCTCCTAACTCAAAAGACCAAATATCAAGTGGCAGGTTGGATAATCTCATATTAGAGTCGATTATCAAGTTAAAGGAGCCAAAAGGTTCTGACCGGTCTGCCATTGCTGCTTATATAGAGGATCAATACTCATGTCCACCGAACCTCAGGAAGTTGCTGTCAGTGAAACTGAAGCATATGGTGGCAAGTGGCAAATTGATGAAGGTAAAGCATAAGTACAGGATTACAGCAAATTCAACAATCTCTGAGAAGAGAAGATGCTCTTCCCTGTTACTCCAAGAAGGGAGGGCAAAAGTCTCTCCAAAAGCAGAGAAGACTGATGTCAGCATCCTTTCAAAATCCCAAATTGATGCAGAGCTATCAAAAATGAAGGGTGTGACAGCTCAGGAGGCAGCGGCGGCTGCTGCAAAAGCAGTTGCAGAAGCTGAAGCTGCCATTGCTGAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCCGCAGAAGCCGAAGCAGAGGCTGCACGAGTATTTGCAAAGGCAGCAATGAAAGCGCTAAAATGCAAAGCACTTCATCTTTGGTAG 891 0.4646 MGAPKQKWTAEEEAALKAGVVKHGPGKWRTILTDPEFSSVLCMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPTPKIDNNHLALSTVVQRDEVADTKPPAVSGGALQSPNSKDQISSGRLDNLILESIIKLKEPKGSDRSAIAAYIEDQYSCPPNLRKLLSVKLKHMVASGKLMKVKHKYRITANSTISEKRRCSSLLLQEGRAKVSPKAEKTDVSILSKSQIDAELSKMKGVTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAARVFAKAAMKALKCKALHLW* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0811 296 Gene3D - 115 220 IPR036388 -
Dod02g0811 296 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Dod02g0811 296 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Dod02g0811 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Dod02g0811 296 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod02g0811 296 PANTHER SINGLE MYB HISTONE 4 1 295 IPR044597 GO:0003691
Dod02g0811 296 CDD SANT_TRF 6 57 - -
Dod02g0811 296 Pfam linker histone H1 and H5 family 125 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod02g0811 296 Gene3D - 2 59 - -
Dod02g0811 296 MobiDBLite consensus disorder prediction 99 118 - -
Dod02g0811 296 PANTHER MYB TRANSCRIPTION FACTOR 1 295 - -
Dod02g0811 296 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Dod02g0811 296 SUPERFAMILY "Winged helix" DNA-binding domain 120 197 IPR036390 -
Dod02g0811 296 SMART sant 4 59 IPR001005 -
Dod02g0811 296 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod02g0811 296 Coils Coil 243 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0811 Dod-Chr2 10482602 10487484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0811 1 296 Single Myb Histone (SMH) Gene Family AT5G67580 56.478 5.98e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod02g0811 Linker_histone 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0811 K09422 - gmx:778165 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0811 02 10482602 10487484 Dod05g1182 05 33414461 33431850 PCT