Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0728 ATGTGGGATCTGAATGACTCTCCCGATCAGAGAAAGCAGGACTACGAATCCGAAGGGTGTTCTTCCCTCAAAACTTCCATGGATGGCGACGATGACAACAAGAAGGGCAAGAGTAGGGTCGGATCTGTCTCCAATTCGAGCTCCTCAGCGGTAGTCATAGAAGATGGATCCGAAGAAGAAGAAGACGCCACCAGAACCCTGATGAAGAAAAGAAACAGCAGCAAGATATTTGGGTTCTCTGTCACCCACGAGAAGGAGTTCATGGACAGTGAAAACAACCCGCCGGTCACCCGGCAGTTTTTTCCGGTGGAGGACTCCGAGATGGCAGCTTCCGCCTCCGGTGGCGGCGGTGGTAGAAGCTCCTCCTTCCCTCGAGCTCACTGGGTAGGAGTGAAATTTTGCCAATCGGAGGCGCTTGGTGGTGGAAAATCAGTTGAAGTTTCGCAGCCTATGAAGAAGAGTAGGAGAGGACCAAGGTCTAGAAGCTCGCAGTATAGGGGAGTCACCTTTTACAGAAGAACGGGTCGATGGGAATCTCATATTTGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCCATTAAGTTCCGGGGAGTGGAGGCTGACATAAACTTCAATATTGAAGATTATGAAGAAGACTTGAAGCAGATGAGTAATCTAACCAAGGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCTAAATATAGAGGTGTAACTTTGCACAAGTGTGGTAGATGGGAGGCTAGAATGGGCCAATTTTTGGGCAAAAAGTACGTTTATTTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCTTATGACAAAGCAGCAATAAAATGCAACGGAAAAGAGGCCGTGACCAATTTTGATCCAAGCATCTATGAAAACGAGCTTAATTCTGAATCCTCAGGTAACGTTCCGGCAGATCACAATCTGGATCTTAGTTTAGGTAATCCAAGTTCAAAGCACAGCAATAATCAATCATTTGGGAATCACACCCTAAATGCTGTTGATGATCAGCATATGCCATCTGAATCTCATTGGCGTAATGGTGGAAGCAAGCCTAACAAGCTGGTGAATATACTACCAAAACCATGTAGCAGAAGCAACATGGAGGCACATGTAAAGGATGGCCACCGAGAGAATGAAGCCTTGCGGCTGCTAAATCATCAAACTCATTTTCAATCTCCAGCCTCCAATGAAATGCATATATATGTTCCATACAGGTCGCATGGAGAGCCTCAAATGCTTCACAGTTTTGCACATGTTCACCCACCAAATTTTCATTTTCCAAGCAGCAGCAATGGAGGCCGTATTGGAAGTGATCTTTCATTATCAGTGAGCGATCAACAACAGTGGCAAACCGGGCCTCCTCATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAGATTAGACCCTCCCAGGGTTGGCTGCAGGAAAATGGGTTCCACACTCTTTCGAGACCCCCTTGA 1551 0.4707 MWDLNDSPDQRKQDYESEGCSSLKTSMDGDDDNKKGKSRVGSVSNSSSSAVVIEDGSEEEEDATRTLMKKRNSSKIFGFSVTHEKEFMDSENNPPVTRQFFPVEDSEMAASASGGGGGRSSSFPRAHWVGVKFCQSEALGGGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGNVPADHNLDLSLGNPSSKHSNNQSFGNHTLNAVDDQHMPSESHWRNGGSKPNKLVNILPKPCSRSNMEAHVKDGHRENEALRLLNHQTHFQSPASNEMHIYVPYRSHGEPQMLHSFAHVHPPNFHFPSSSNGGRIGSDLSLSVSDQQQWQTGPPHLLATAAASSGFPPQIRPSQGWLQENGFHTLSRPP* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0728 516 ProSiteProfiles AP2/ERF domain profile. 164 220 IPR001471 GO:0003700|GO:0006355
Dod02g0728 516 MobiDBLite consensus disorder prediction 1 67 - -
Dod02g0728 516 MobiDBLite consensus disorder prediction 493 516 - -
Dod02g0728 516 CDD AP2 164 221 IPR001471 GO:0003700|GO:0006355
Dod02g0728 516 CDD AP2 255 315 IPR001471 GO:0003700|GO:0006355
Dod02g0728 516 Pfam AP2 domain 164 212 IPR001471 GO:0003700|GO:0006355
Dod02g0728 516 Pfam AP2 domain 255 304 IPR001471 GO:0003700|GO:0006355
Dod02g0728 516 SUPERFAMILY DNA-binding domain 163 221 IPR016177 GO:0003677
Dod02g0728 516 SUPERFAMILY DNA-binding domain 255 315 IPR016177 GO:0003677
Dod02g0728 516 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 513 - -
Dod02g0728 516 MobiDBLite consensus disorder prediction 321 376 - -
Dod02g0728 516 MobiDBLite consensus disorder prediction 1 18 - -
Dod02g0728 516 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 513 - -
Dod02g0728 516 MobiDBLite consensus disorder prediction 321 380 - -
Dod02g0728 516 PRINTS Ethylene responsive element binding protein signature 295 315 IPR001471 GO:0003700|GO:0006355
Dod02g0728 516 PRINTS Ethylene responsive element binding protein signature 257 268 IPR001471 GO:0003700|GO:0006355
Dod02g0728 516 MobiDBLite consensus disorder prediction 491 516 - -
Dod02g0728 516 MobiDBLite consensus disorder prediction 39 53 - -
Dod02g0728 516 Gene3D AP2/ERF domain 163 222 IPR036955 GO:0003700|GO:0006355
Dod02g0728 516 Gene3D AP2/ERF domain 255 314 IPR036955 GO:0003700|GO:0006355
Dod02g0728 516 ProSiteProfiles AP2/ERF domain profile. 256 313 IPR001471 GO:0003700|GO:0006355
Dod02g0728 516 MobiDBLite consensus disorder prediction 144 164 - -
Dod02g0728 516 SMART rav1_2 256 319 IPR001471 GO:0003700|GO:0006355
Dod02g0728 516 SMART rav1_2 164 226 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0728 Dod-Chr2 9447717 9451202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0728 1 346 AP2-EREBP Transcription Factor Family AT4G36920 69.722 5.45e-141 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dod02g0728 AP2 3.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0728 K09284 - gmx:100792442 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0728 02 9447717 9451202 Dod02g0728 02 9447717 9451202 ECH
Dod02g0728 02 9447717 9451202 Dod05g1080 05 29846251 29850991 PCT