Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0714 ATGAAATGTTCTTCGTTGTTCGGCAAGGTTGGAAATGGTGGTGTTGAGTCGGCTAGGGTTGTTAGCAACGGTGGCAGCGATGAAATTAGAGAAAATGTGTGTTCTATTGAAGATGATTCAGATGATGGAAGACTTTTCGGTTCTGAAAATGGTAACGAATTGAACAAAGAGCAAGTGCTGCAAACTAATGGAGATTTGGTTGAGGAGAAGGTGATGAAGGAGGAGGTTGAGATAGAAGCAAAACCAGTTGCCGCTGCTGCGACGAAGAAGAAGAAGGAAGTGTTTACCTTGAATGCGAAGGTGAAAGACGAAGAGGACCCGGCGTTGAGTGCGGCTTTGGGTTGGAAGGAAGCAATGAGTGGTGCGGGAGGAGGGGAAGTGAATGTTGCTGCGGATTCGAAAGCAGAAGCGTTGAGGGATGCTTCTTCACTTAAGGAAGAACAATCGGAGTTCAAGCTTGAGGCTGATGGGTCGCTTCCTTTCTACATATTAGATGCCCATGAAGAGTTTCAAGGTCAAGGAGCCAACAAGGGTACCCTTTACTTGTTTGGGAAGGTGAAAGCAGGGAATTCGTATCAGAGTTGCTGTGTTGTTGTGAAAAACATCCAGAGATGTGTGTATGCCATTCCAAGTAACCCGTTACAATACACTGATGAGATGAAGAAGCTTGAGAAAGATGTCCAAGAGTCTCGAATTTCTCCAGCCGATTTCCGTAAAAAGCTCCAAGATGCAGCATCTGGTTTAAAGAACGAGATAGCAAAACATCTGATGGACCTGAATGTTTCGACCTTTAGCATGGCGCCTGTTAAGAGGAAGTATGCATTTGAACGATCTGAAGTTCCCAGTGGTGAAAATTATGTGGTGAAAATCAATTATCCATTCAAGGACCCAGTACTCCCAGTAGACCTGAAAGGAGAAAGTTTCTGTGCTCTTTTAGGCACTCATTGTAGTGCACTGGAGCTTTTTCTGATTAAAAGAAACATAAAGGGGCCTTCATGGCTACAGGTTTCGAACTTTTCCACCAGCTCTCAGAGGGTTAGCTGGTGCAAATTTGAAGTGAATGTCAACTCTCCTAAAGACATAAGGATTTCAACCTCATCAAAAATCAGTTTTGAGATTCCTCCTGTTGTTGTCACTGCGATAAATTTGAAAACCGTCCTAAATGAAAAACAGAATGTACATGAGATTGTATCTGCATCTATAATCAGCTGCAATATGGTTAAGATTGATGCTCCCATGTTGACTTCTGAGTGGAGGAAAGCTGGAATGCTGACCCATTTTACTGTTATTCGTAAACCTGATGGACTTATATTTCCAGTGGGATTCAGTACGGAGGTTACAGAAAGAAACAGAAAATCCAAGTCAAATGTTCTTGGTGTTGAAAGCAGTGAAAGAGCTTTGTTAAACCGCCTAATGACACAATTACACAAGTTGGACAGTGATGTTCTCGTCGGACATAATATTTCTGGATTTGACCTGGAAGTTATTCTCCACAGATTCCAGGCTTGCAAAGTAGCAAGTGACATGTGGTCTAAATTGGGCCGCCTTAGGCGTTCTGCATTGCCTAAGCTTGATAGAGGAAGCAGTACTTTTGGTGCTGGAGCTCGTCCTGTTATCATGTCTTGCATCGCTGGCCGGCTTCTTTGTGATACATACTTGTGTTCCCGTGACCTACTGAAAGAGGTTAGTTATTCGTTAACTGAACTTGCAAAAACACAGCTGAAAAAGATTCGGAAGGAAATCACTCCACATGATGTTCCAAACAAGTTCCAATCAGCCGAATCCCTATTTGAACTTATTGAATGTGGTGAAACGGATGCATGGTTGTCCATGGAGCTCATGTTTCATTTGAGTGTTCTTCCTCTCACTCGTCAGCTGACTAATATCAGTGGTAACCTATGGGGGAAAACTCTTCAGGGTGCTAGGGCACAGAGAGTGGAGTATCTTTTGTTGCATGCTTTCCATGCTAAGAAATATATTGTGCCGGACAAGATTCCAAACCATGCAAAAGAAACAAAATTGACGAAACGTAAAGTAACTCATGGTGTTGAGGATAGAAACTTTGACAATGCAGGTATTGATGGCACAAACTATGATGATGCTCCAGACAGTGATAATAAGAAAAGCAAAAAGGCTCCTTCATATGCTGGTGGTCTGGTGTTAGAGCCAAAGAAGGGTCTATATGACAAATATATATTACTATTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAATACAACATCTGCTTTACAACTGTTGAAAGATCTTCAGATGGATCTTTTCCTTGTTTACCATCTAGTAAAACAACTGGAGTTTTGCCTGAGTTGGTGCAAAATCTGGTTCAAAGGAGGAGAATGGTGAAAAAGTGGATGAAGACAGCATCTGGTCTTAAATTTCAGCAGCTGGACATTCAGCAGCAGGCATTGAAGCTTACTGCAAACAGTATGTACGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCAAAGCCACTTGCTGAACTTATCACCTTGCAAGGAAGGGAGATATTGCAGAGTACTGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTGATCTATGGCGACACTGATTCAATAATGATATACAGTGGGCTAGATGATATTGAAAAAGCAAAACTAATTGCTGGGAAAGTTATTCAAGAGGTCAATAAGAAATATAGATGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGGATGCTACTTCTTAAGAAAAAGAAATATGCAGCTGTAAAGGTGCAGTTCAACGATGGCACCGCATATGAGGTTATTGAACGTAAAGGTCTTGATATTGTCCGCCGTGATTGGAGCTTACTAGCTAAAGAATTAGGGGATTTTTGCTTGAGTCAAATTTTGTCAGGAGGGTCATGTGAAGATGTTGTTGAATCGATTCACAGTTCTCTCATGAAGGTAGTTCAAGAAGAAATGAGGAGTGGACAAGTACCACTAGAGAAGTATCTCATCACTAAGACATTGACTAAACCTCCTGATGCTTATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACTCTGGTTGCTCTGTTGGTGATACAATCCCTTATATAATTTGTTATGAGGAGGGCTGTAGTTCAGGTAGTGCAACGGGCATTGCTCAGCGTGCAAGACATCCTGATGAACTGAAACGAGAGCAAGGGAAATGGCTTATTGACATTGAGTACTATTTGTCACAACAGATTCATCCAGTGGTATCACGTCTTTGTGCATCAATTCAGGGCACAAGCCCAGAAAGACTGGCTGATTGTTTAGGGCTTGACTCGTCAAAGTTTCAGCATAAATCAAGTGAAGCATCAAGTAGTGATCCTACAAGCTCACTCTTGTTTGATGCTGATGATGAGGAGAGGTATCGGGGATGTGAGCCATTGGTCTTGTCATGCCCCAGCTGCTCTGATACTTTTGACTGCCCACCTGTTTTTAAATCTATTTATAAGTTGGAAAGTGAAAAGACAACCAGCTTAGACGCGGGGGAAGCCAATTACAATTTCTGGCGAAAGCTGCGCTGTCCTAAATGCCCGGAAGATGGTGTCAGTAGAATATCTCCTGCAATGATAGCCAATCAGGTCAAAAGGCAAGCAGAGAAGTTTGTTTTAATGTACTATAGAGGTTTACTAATGTGTGATGATGAAACGTGTAAGCATACAACGCGAAGTATCAGCTTTAGGTTGGTGGGTGATTCTGAGAGAGGAACTGTTTGTCCAAACTATCCTCGGTGCAACGGGCGTCTCTATAGAAAGTACACTGAAGCAGAGTTGTACAAGCAGCTCTCATATTTTTGCCATGTATTGGATACCGTTTGCGGTATAGAAAAGATGGAGGCTAAATCTAGGATGCCGATTGAGAAAGAGTTGATAAAACTCAGGCCAATGGTTGATCAGGCAGCATCCACAGTACAGAAAATCAGAGACCGATGTGCCTATGGGTGGGTGAAGCTACAGGACCTCGTCGTTACAGTTTAA 4032 0.4214 MKCSSLFGKVGNGGVESARVVSNGGSDEIRENVCSIEDDSDDGRLFGSENGNELNKEQVLQTNGDLVEEKVMKEEVEIEAKPVAAAATKKKKEVFTLNAKVKDEEDPALSAALGWKEAMSGAGGGEVNVAADSKAEALRDASSLKEEQSEFKLEADGSLPFYILDAHEEFQGQGANKGTLYLFGKVKAGNSYQSCCVVVKNIQRCVYAIPSNPLQYTDEMKKLEKDVQESRISPADFRKKLQDAASGLKNEIAKHLMDLNVSTFSMAPVKRKYAFERSEVPSGENYVVKINYPFKDPVLPVDLKGESFCALLGTHCSALELFLIKRNIKGPSWLQVSNFSTSSQRVSWCKFEVNVNSPKDIRISTSSKISFEIPPVVVTAINLKTVLNEKQNVHEIVSASIISCNMVKIDAPMLTSEWRKAGMLTHFTVIRKPDGLIFPVGFSTEVTERNRKSKSNVLGVESSERALLNRLMTQLHKLDSDVLVGHNISGFDLEVILHRFQACKVASDMWSKLGRLRRSALPKLDRGSSTFGAGARPVIMSCIAGRLLCDTYLCSRDLLKEVSYSLTELAKTQLKKIRKEITPHDVPNKFQSAESLFELIECGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKIPNHAKETKLTKRKVTHGVEDRNFDNAGIDGTNYDDAPDSDNKKSKKAPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPCLPSSKTTGVLPELVQNLVQRRRMVKKWMKTASGLKFQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIEKAKLIAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFNDGTAYEVIERKGLDIVRRDWSLLAKELGDFCLSQILSGGSCEDVVESIHSSLMKVVQEEMRSGQVPLEKYLITKTLTKPPDAYPDAKNQPHVLVAQRLKQQGYSGCSVGDTIPYIICYEEGCSSGSATGIAQRARHPDELKREQGKWLIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQHKSSEASSSDPTSSLLFDADDEERYRGCEPLVLSCPSCSDTFDCPPVFKSIYKLESEKTTSLDAGEANYNFWRKLRCPKCPEDGVSRISPAMIANQVKRQAEKFVLMYYRGLLMCDDETCKHTTRSISFRLVGDSERGTVCPNYPRCNGRLYRKYTEAELYKQLSYFCHVLDTVCGIEKMEAKSRMPIEKELIKLRPMVDQAASTVQKIRDRCAYGWVKLQDLVVTV* 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0714 1343 Coils Coil 238 258 - -
Dod02g0714 1343 Pfam DNA polymerase family B 633 1095 IPR006134 GO:0000166|GO:0003677
Dod02g0714 1343 Gene3D Helix hairpin bin 778 821 - -
Dod02g0714 1343 SUPERFAMILY Ribonuclease H-like 156 662 IPR012337 -
Dod02g0714 1343 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 131 1340 - -
Dod02g0714 1343 Pfam DNA Polymerase alpha zinc finger 1135 1339 IPR015088 GO:0003887|GO:0006260
Dod02g0714 1343 SMART polmehr3 374 875 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dod02g0714 1343 Gene3D - 374 687 IPR036397 GO:0003676
Dod02g0714 1343 Gene3D - 161 360 - -
Dod02g0714 1343 Gene3D - 939 1125 IPR042087 -
Dod02g0714 1343 MobiDBLite consensus disorder prediction 1 23 - -
Dod02g0714 1343 Pfam DNA polymerase family B, exonuclease domain 192 568 IPR006133 -
Dod02g0714 1343 PANTHER DNA POLYMERASE 131 1340 - -
Dod02g0714 1343 TIGRFAM pol2: DNA polymerase (pol2) 59 1093 - -
Dod02g0714 1343 ProSitePatterns DNA polymerase family B signature. 863 871 IPR017964 GO:0000166|GO:0003676
Dod02g0714 1343 Gene3D DNA Polymerase alpha, zinc finger 1134 1329 IPR038256 -
Dod02g0714 1343 Gene3D - 203 329 - -
Dod02g0714 1343 CDD POLBc_alpha 708 1111 IPR045846 GO:0003887|GO:1902975
Dod02g0714 1343 CDD DNA_polB_alpha_exo 374 625 - -
Dod02g0714 1343 SUPERFAMILY DNA/RNA polymerases 658 1111 IPR043502 -
Dod02g0714 1343 MobiDBLite consensus disorder prediction 686 714 - -
Dod02g0714 1343 Gene3D Palm domain of DNA polymerase 701 925 IPR023211 -
Dod02g0714 1343 Coils Coil 889 909 - -
Dod02g0714 1343 PRINTS DNA-directed DNA-polymerase family B signature 861 869 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dod02g0714 1343 PRINTS DNA-directed DNA-polymerase family B signature 808 820 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dod02g0714 1343 PRINTS DNA-directed DNA-polymerase family B signature 732 745 IPR006172 GO:0000166|GO:0003676|GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0714 Dod-Chr2 9281344 9292097 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0714 20 1341 Core DNA Replication Machinery Family AT5G67100 63.609 0.0 1698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0714 K02320 - gmx:100798779 1935.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0714 02 9281344 9292097 Dod02g0714 02 9281344 9292097 ECH