Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0704 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATCCCGTGGGATGTTGACACTGAGGGCTTGAGGGAATACATGAGCAAATTTGGTGAACTGGAAGATTGTATTGTCATGAAGGAGCGCTCAACTGGACGGTCTCGTGGATTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGATGTATTATCGAGTGAACATATTCTTGGCAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAAGAGATGAGGGCACCAGTCAAAAAAGTTACCAGAATATTTGTTGCAAGGATTCCACAATCAGTAACAGAAGCAACCTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATTTATACATGCCAAAGGATCAAGGCTCAAAAATGCACCGTGGAATTGGTTTTATCACCTTTGCCAGTGCAGATTCTGTGGAGAATTTGATGGCAGAAACTCATGAGCTGGGGGGTTCTACTGTGGTGGTTGATCGAGCTACGCCTAAGGATGACGAAGTTAAGCCAATTGGCAGAATGCCACAGGGAGGATATGGTGCATACAATGCTTATATTTCTGCTGCAACTAGATATGCAGCATTAGGTGCTCCTACTTTGTATGATCACCCTGGCCCAATTTATGGAAGGGGAGAACCTTCTCGTGGAATTGGTAAAAAGATATTTGTTGGCCGACTTCCCCCAGAGGCAACCACTGACGATCTTCGACAGTATTTCGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCCAGGGATCCCAAGAGATCAGGCCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCGCGAAGGTCTCATGAGATTTGTGGACATCAGGTAGCAATAGATTCAGCCACACCTGTTGATGATGCTGGGCCAAGTGGGCCAAGTGGGCCCAGTGGGCCTAGTGGGAATTTTATGATGAATACTATGGGGTCCTTCGGGGGATATGGCGGTCCTATGCGAACTTATGGGAGGATGTATGGCAGCCTAGACTTCGATGATTGGGGCTATGGAATTGCCGGTGGGAGACCGTCAAGAGCAGATTGGAGGTATAGGCCCTACTAG 1107 0.4598 MEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKDVLSSEHILGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFASADSVENLMAETHELGGSTVVVDRATPKDDEVKPIGRMPQGGYGAYNAYISAATRYAALGAPTLYDHPGPIYGRGEPSRGIGKKIFVGRLPPEATTDDLRQYFGRFGRILDVYVPRDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGPSGPSGPSGNFMMNTMGSFGGYGGPMRTYGRMYGSLDFDDWGYGIAGGRPSRADWRYRPY* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0704 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Dod02g0704 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 64 IPR000504 GO:0003723
Dod02g0704 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 280 IPR000504 GO:0003723
Dod02g0704 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Dod02g0704 368 SMART rrm1_1 225 296 IPR000504 GO:0003723
Dod02g0704 368 SMART rrm1_1 93 164 IPR000504 GO:0003723
Dod02g0704 368 SMART rrm1_1 5 76 IPR000504 GO:0003723
Dod02g0704 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Dod02g0704 368 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Dod02g0704 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Dod02g0704 368 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 368 - -
Dod02g0704 368 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Dod02g0704 368 MobiDBLite consensus disorder prediction 294 319 - -
Dod02g0704 368 Gene3D - 1 86 IPR012677 -
Dod02g0704 368 Gene3D - 87 175 IPR012677 -
Dod02g0704 368 Gene3D - 223 304 IPR012677 -
Dod02g0704 368 SUPERFAMILY RNA-binding domain, RBD 224 332 IPR035979 GO:0003676
Dod02g0704 368 PANTHER OS01G0945800 PROTEIN 3 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0704 Dod-Chr2 9174005 9179367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0704 5 293 Eukaryotic Initiation Factors Gene Family AT2G23350 25.503 6.01e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0704 K14411 - gmx:100795240 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0704 02 9174005 9179367 Dod02g0704 02 9174005 9179367 ECH