Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0673 ATGTCGTCGTCGAATTCACCGTGCGCGGCGTGCAAGTTCCTGCGGCGGAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTATTTTCCGCCGGATAACCCGCAGAGGTTTGCTTACGTTCACAAGGTCTTCGGGGCCAGCAACGTCGCGAAGCTTCTCAACGAGCTGAACGCGGCGCAGCGAGACGACGCCGTAAAGTCCCTTGCTTACGAAGCAGAGGCGCGGTTAAGGGACCCGGTGTACGGGTGCGTGGGGCTCATTTCGGTGCTTCAGCACAGGCTCAGGCAGATCCAGGTGGAGCTCAACAACGCAAAGAAGGAGCTCGCAACATACATTGGGCCACAGGCACTTCAGGGGGTTCCAGCTGCCACCACCACCATGCTCCAACACCACCACCCTTTTGCTAACCAAATGTTTCCTTATAATGGTGCCATGGGGTCGCAGGCTGCGGCTGCGGCGGTGGCGGGTCACGTTGGGCAGTTGATGATTCGGGATGCTCAGCCGCAGCAGCAGATCCTGGAGGCGCAGCAGCTGGCTGCGGCGGTTGCGGTGAGGGATCAGCAGGAGATGTTTAGGGGGTTTGAGCAGCACCACCATCAGCAGCAGGAGTTTCTGAGGTTCAATGGTGGTGGGTTTGATGTGGGTTCGGTTCCTTCTGGTGGTGGTGGGGGTGGTGGTGGCTTCAGCCAGGTGTCTGGCGGTGGTGGTGGAGGCGTTGGTAGTGGTGGTGATGATCAGTTGTCTCCTTCCTTGGCTTTGGGGTCTTTTGATAACCCTTACCATATGCAACAGGCGCAGCAGGGGGAAGCTCATGCTCATCACATTCCGCTCCAGGCGCAGCTTCTTCTACCGCCGCAGCAGAAGCAGGCACAGCAGCAAGCGCAGCAGTCGCAGATGCCCGGACACCACCAGCAGCCGTCGGAAAGCGAGGAGTGTAGGAGTGTCGGCCCATCTTGCTGA 957 0.5967 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLRQIQVELNNAKKELATYIGPQALQGVPAATTTMLQHHHPFANQMFPYNGAMGSQAAAAAVAGHVGQLMIRDAQPQQQILEAQQLAAAVAVRDQQEMFRGFEQHHHQQQEFLRFNGGGFDVGSVPSGGGGGGGGFSQVSGGGGGGVGSGGDDQLSPSLALGSFDNPYHMQQAQQGEAHAHHIPLQAQLLLPPQQKQAQQQAQQSQMPGHHQQPSESEECRSVGPSC* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0673 318 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 292 - -
Dod02g0673 318 MobiDBLite consensus disorder prediction 281 318 - -
Dod02g0673 318 MobiDBLite consensus disorder prediction 207 256 - -
Dod02g0673 318 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Dod02g0673 318 Coils Coil 86 106 - -
Dod02g0673 318 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 292 - -
Dod02g0673 318 MobiDBLite consensus disorder prediction 279 318 - -
Dod02g0673 318 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0673 Dod-Chr2 8759937 8762659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0673 1 260 AS2 family AT5G66870 53.597 1.70e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod02g0673 LOB 1.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0673 - - lja:Lj2g3v1834030.1 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0673 02 8759937 8762659 Dod05g1010 05 24951985 24953070 PCT
Dod05g1009 05 24945724 24946671 Dod02g0673 02 8759937 8762659 PCT