Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0671 ATGGAGTTGGGTTTGGATTTGAGCTTGTCCTTTGTCCCCAACACAATTTCACTGTTCCTTGGTGATGTTTCTCGCAACACAGACTCGTCTGAGAAATTGACCATGCTTGAGGACTTCCTCAAGAGATTGGAGGATGAGATGAGGAAGATCGAGGCCTTCAAACGTGAGCTTCCTCTTTGCATGCTCCTGGTAAAAGATGCTGTAACAAGGTTGAAGGAGGAAAAGGTTCGGTGTGTGGGAATGCAAGATCCACCTGTGACTGAGGAATTCATGCCAGTGATGAGAACCAATTCTGGAGGAAATAATAATGGAGTAATACCCTTGAAGGAAAGTTCTGACAAGAAGAGCTGGATGAGCTCTGCTCAGTTATGGAGCACTGAAACCAAATCGAGGTGTGAAGAAGAAGATAGGTCTGTGCCTGAGAACCCAATTCAAACAAGGGAGCATTATCACGAGAACAGAAGTGGAGGAGCATTGTTCAATGGGAATTCGTTTCCCCACAAGGCAGAGACCAAGGAGGTTTCACAAGTTCCTAGCTTTACTTTGATGACTCCTGCAGCTTCTGAACTGAATCATCATAAGAATTCGAAGATTGGGTGTGGAGGTTCCTCTTTGCTCATGAGCCGCGTTGAGATACATGGTCAAGCACAAGCACAAGCACAACCTCAGCATCTGCAGCAGAATCCAAGGAAACAAAGGCGGTGCTGGTCGCCGGAGCTTCATCGGCGTTTCGTTGATGCGCTTCAACAACTTGGGGGAGCACAAGTGGCCACCCCTAAGCAAATTAGGGAACTGATGCAAGTGGAAGGCCTCACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATGTTAGAAGATTCCCATTATCTTCAGCTGAGCAAGCTAGTAATGGTTTATGGGTGGCCAAAGATCAATGTGCAAAGGAGAACTCATCACTGTCAGGTTCTCCACAAGGGCCTCTACTACTAAGAGGGTCTGTCAAAGGCCTCTCAAGCCCCAGTGTGGATGCAGAAGATGAGCAATCAGATTGCAGGAATTGGAAGGGTGGGATTCACCAGCAACCAGAAGCTGATAATCAGAGCCTCTAA 1098 0.4681 MELGLDLSLSFVPNTISLFLGDVSRNTDSSEKLTMLEDFLKRLEDEMRKIEAFKRELPLCMLLVKDAVTRLKEEKVRCVGMQDPPVTEEFMPVMRTNSGGNNNGVIPLKESSDKKSWMSSAQLWSTETKSRCEEEDRSVPENPIQTREHYHENRSGGALFNGNSFPHKAETKEVSQVPSFTLMTPAASELNHHKNSKIGCGGSSLLMSRVEIHGQAQAQAQPQHLQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHVRRFPLSSAEQASNGLWVAKDQCAKENSSLSGSPQGPLLLRGSVKGLSSPSVDAEDEQSDCRNWKGGIHQQPEADNQSL* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0671 365 Pfam Myb-like DNA-binding domain 233 284 IPR001005 -
Dod02g0671 365 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 231 286 IPR006447 GO:0003677
Dod02g0671 365 SUPERFAMILY Homeodomain-like 229 289 IPR009057 -
Dod02g0671 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 356 IPR044787 GO:0003700|GO:0006355
Dod02g0671 365 Coils Coil 36 56 - -
Dod02g0671 365 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 356 - -
Dod02g0671 365 MobiDBLite consensus disorder prediction 94 112 - -
Dod02g0671 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 228 288 IPR017930 -
Dod02g0671 365 MobiDBLite consensus disorder prediction 91 112 - -
Dod02g0671 365 Gene3D - 230 287 - -
Dod02g0671 365 MobiDBLite consensus disorder prediction 312 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0671 Dod-Chr2 8738337 8741180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0671 1 281 G2-like Transcription Factor Family AT4G37180 41.034 1.25e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod02g0671 Myb_DNA-binding 1.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0671 - - pvu:PHAVU_002G021400g 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0671 02 8738337 8741180 Dod02g0671 02 8738337 8741180 ECH