Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0628 ATGGGTTGGCTTACCAAGTTGCTTAAGGGCTCCAATCATGAAGTTTCAAAGGGACAATATCATGGCAAATATGGAGAGGACAGAATTTGGGATAATCATCAAGCGGATGATTTGACTGATGGTGAGAAAGAAGATATTGACTGTGCAATTGCACTCTCTCTGTCAGAGCAGGATCAGAAAGGGAAAAAAGTTGTTGAGGATGACTCTCAATCTGAAGATGAACAACTTTGTAATATTGATGATGAGGAAGATGAACATATTTGGAAAGTTCAACCAGAGGAAGATGGACATCTTGGTAAAGTTCAACCAAAGGAAGATGAACATTGTGAAAAGGTTCGACCTGAGGAAGATGAACATCTTGCTAAACTTCAACAGGATGAAGATGAAAATCAGGCTAAAGTTCAACTTGAGGAAGATGAGCAACTTGCCAGGGCAATTCAAGAAAGTTTGAACATCGGTTCTCCACCTAGATATGACAATGATTCTTTATTTCAACCTTTTTCACACCTCTTTTCTCCTGGATACAGAATCTGCGCTGGATGCAATGCTGAGATTGGTCATGGAAGATTTTTAAGTTGCATGGGAGCTGTCTGGCATCCAGAATGTTTCCGCTGCCAAGCTTGCAATAAGCCAATCACTGATTATGAGTTTTCCATGTCGAGCAATCGCCCTTACCATAAATCCTGCTACAGGGAGCAACATCACCCAAGATGTGACGTTTGCAGGAACTTTATCCCAACTAATTCAGCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGTCCATCACATGAGCGTGATGGCACTCCTCGCTGTTGCAGCTGTGAAAGAATGGAGCCAAGGGATACAAAATATCTTTTGCTTGATGACGGTCGAAAGCTATGTCTAGAGTGTCTAGACTCGGCAATAATGGATACTCATGAGTGCCAACCTCTCTACCTCGAAATACAAGAGTTCTATGAAGGCTTGAATATGAAAGTGGAGCAGCAAATTCCCATGCTTCTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTATGCTTGTCAGAAGAGCAAACTGTCACAACTATTTTAAGGAGACCAAGGATAGGAGCAGGCCACCGGGCCATAGATATGATAACCGAGCCTTATAGGCTGATCCGTCGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGTATCCCTCTTATACTTCTATTATTTTAACATACTCATTTAGACATTCGAATTGA 1302 0.4217 MGWLTKLLKGSNHEVSKGQYHGKYGEDRIWDNHQADDLTDGEKEDIDCAIALSLSEQDQKGKKVVEDDSQSEDEQLCNIDDEEDEHIWKVQPEEDGHLGKVQPKEDEHCEKVRPEEDEHLAKLQQDEDENQAKVQLEEDEQLARAIQESLNIGSPPRYDNDSLFQPFSHLFSPGYRICAGCNAEIGHGRFLSCMGAVWHPECFRCQACNKPITDYEFSMSSNRPYHKSCYREQHHPRCDVCRNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGHRAIDMITEPYRLIRRCEVTAILVLYGLPRYPSYTSIILTYSFRHSN* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0628 433 Gene3D Cysteine Rich Protein 170 235 - -
Dod02g0628 433 ProSiteProfiles LIM domain profile. 176 236 IPR001781 -
Dod02g0628 433 CDD LIM_DA1 178 230 - -
Dod02g0628 433 PANTHER PROTEIN DA1-RELATED 2 111 429 IPR045218 -
Dod02g0628 433 PANTHER PROTEIN DA1-RELATED 2 1 122 IPR045218 -
Dod02g0628 433 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 137 150 IPR003903 -
Dod02g0628 433 Pfam Protein DA1 327 431 IPR022087 -
Dod02g0628 433 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 111 429 - -
Dod02g0628 433 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 122 - -
Dod02g0628 433 MobiDBLite consensus disorder prediction 91 117 - -
Dod02g0628 433 ProSitePatterns LIM zinc-binding domain signature. 178 212 IPR001781 -
Dod02g0628 433 Pfam LIM domain 178 233 IPR001781 -
Dod02g0628 433 SMART lim_4 177 229 IPR001781 -
Dod02g0628 433 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 170 203 - -
Dod02g0628 433 Coils Coil 120 140 - -
Dod02g0628 433 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 259 - -
Dod02g0628 433 SMART uim 41 60 IPR003903 -
Dod02g0628 433 SMART uim 137 156 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0628 Dod-Chr2 8240846 8247004 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod02g0628 DA1-like 2.2e-42 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0628 - - gmx:100817969 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0628 02 8240846 8247004 Dod02g0628 02 8240846 8247004 ECH