Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0620 ATGGCTTCTCATGACACCAATGTCATCATCTATTGGCGCCTTGTTTTGGCCATTGTGATTGCCACCCTTGTCACTCCAAACCTTAGTTTTGCCAAGCAATTATCCAAGATAACTGGCATGAAAATGAATGTGATTGATCAATGCTGGAGATCGGATCCCGAATGGAGGAAGCATCGGTCACAACTTGCCAATTGCTCCGTGGGCTATGCTGGCAAGATGACAAACAACTTTGGCGAGGGCCTCATTCATTATAAAGTCACTGACCCCAGCGATGACCCCATAAACCCCAAGCCCGGCACCTTGAGGTATGGGACTTCCGTGATTCAAGGGAAAGTCTGGATCAAATTCGAAAGAGACATGCAGATTAAACTCGCGAGACCCCTTCTTGTTAGTAGTTTCACCACCATTGATGGTCGTGGCGCCAACGTCCACATTGCCGACGATGCTTGCTTGATGATCTTTAAGGCTACCGACGTAATCATCCACAGCATTCGGATTCATCACTGTAAAGCTCAAGCCCCAGGTTTCGTGATGGGTCCCAATGGAAAGGTAATTCCTTTGGGTCAAGTGGATGGGGATGCAATAAGACTGGTAACTGCTTCAAAGATTTGGATTGATCATAATACTCTCCATGATTGCCAAGATGGTCTTCTTGATGTCACACGGGGTTCCACTGATGTGACCGTCTCCAACAACTGGTTCAGAAATCAAAATAAGGTTATGCTTCTTGGACACGATGATGGCTATGTGAGAGACCAGAACATGAGAGTGACGGTCGTGTACAACCATTTCGGCCCTAATTGCAACCAGCGCATGCCAAGGATCCGCCATGGATATGCGCATGTAGCCAACAATCTTTACATGGGATGGGTGCAATATGCCATCGGTGGAAGCATGGAACCTAGCCTCAAAAGCGAAGCAAACCTCTTCATAGCACCAACATCAGGGAGTAAGGAGGTGACATGGAGAAAAGGTAGTCATGAAAACAGAGACACATGGGAATTTCACTCAGTAGGGGACGCTTTTGAGAACGGAGCCTCCTTCACAGTAACAAAAGGTGGACGTGTGCCAAAGCCGAATTATAGCAGGGAACAATGTTTTAAAGTTGTTGATGCTAAATCGGTGAGATCATTGACAAGGTCATCAGGCACATTACAATGCACAAAAACCTCTATATGTTGA 1182 0.4636 MASHDTNVIIYWRLVLAIVIATLVTPNLSFAKQLSKITGMKMNVIDQCWRSDPEWRKHRSQLANCSVGYAGKMTNNFGEGLIHYKVTDPSDDPINPKPGTLRYGTSVIQGKVWIKFERDMQIKLARPLLVSSFTTIDGRGANVHIADDACLMIFKATDVIIHSIRIHHCKAQAPGFVMGPNGKVIPLGQVDGDAIRLVTASKIWIDHNTLHDCQDGLLDVTRGSTDVTVSNNWFRNQNKVMLLGHDDGYVRDQNMRVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSEANLFIAPTSGSKEVTWRKGSHENRDTWEFHSVGDAFENGASFTVTKGGRVPKPNYSREQCFKVVDAKSVRSLTRSSGTLQCTKTSIC* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0620 393 PANTHER PECTATE LYASE 18-RELATED 4 390 IPR045032 GO:0030570
Dod02g0620 393 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Dod02g0620 393 PRINTS Pollen allergen Amb family signature 191 212 IPR018082 -
Dod02g0620 393 PRINTS Pollen allergen Amb family signature 271 290 IPR018082 -
Dod02g0620 393 PRINTS Pollen allergen Amb family signature 364 387 IPR018082 -
Dod02g0620 393 PRINTS Pollen allergen Amb family signature 333 357 IPR018082 -
Dod02g0620 393 PRINTS Pollen allergen Amb family signature 90 115 IPR018082 -
Dod02g0620 393 PRINTS Pollen allergen Amb family signature 127 143 IPR018082 -
Dod02g0620 393 Gene3D - 42 386 IPR012334 -
Dod02g0620 393 SMART amb_all 119 316 IPR002022 -
Dod02g0620 393 Pfam Pectate lyase 129 310 IPR002022 -
Dod02g0620 393 PANTHER PECTATE LYASE 4 390 - -
Dod02g0620 393 SUPERFAMILY Pectin lyase-like 36 360 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0620 Dod-Chr2 7984623 7986839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0620 73 325 Polysaccharide Lyase AT5G09280 72.727 1.29e-146 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0620 K01728 - gmx:100780437 675.626