Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0579 ATGGGTTCGGAGATGGCGGCAAAGGACCAACTCAACAAGGATGAGCCTGCAGAGTCTCCCACTTCCGTCCTCGGAGAAGAGGATGTGTGCGTTGTTAAAGACAATGAGTCTTCACTCATATCAAAGTCTATGGTGGAGGAGGAAGAGAAGCTCGTCAAGGCTAGGATCGAGGAAGAGGAAGCGGAAGCGCAGCGGGAGGAGGCTGCTGACCTCACTGATACGCAGTTTAACAAGTTGGATGAGCTTCTAACGCAGACCAAGCTCTACTCTGAGTTTCTTCTTGAGAAGATGGATGACATCACACTGAATGCGGCTGAGCAAGAGAGCCAGTCAGCAGAGAAGAAGAGGGGGCGAGGTTCTAAGAGGAAAGCAGCTTGTAATACTGGGAAGGCTAAAAGGGCAGTTGCTGCCATGCTGACAAGATCGAAAGAAAGTGAAAAGATTGAAGATGTTGACTTGACTGAAGAAGAAAGAACTGAGAAGGAGCAGAAGGAACTCATGCCTTTATTGACAGGGGGGAAGTTGAAATCATATCAACTGAAGGGTGTAAAGTGGTTGATTTCACTTTGGCAAAATGGACTAAATGGAATTCTCGCTGATCAAATGGGTCTTGGGAAGACAATTCAAACAATAGGGTTTCTTTCACATCTAAAAGGGAAAGGTCTGGATGGACCTTATATGATAATTGCCCCTCTCAGTACCCTTTCAAACTGGCAGAATGAAATTTCTAGGTTTGCACCGTCACTCCCAGCTGTTGTCTACCATGGCGGCAGGAAAGAGAGAGATGAAATTCGAAGAAGACACATGCCGAGAACCATTGGGCCAAAATTTCCCATTGTAATTACTTCTTTTGAGATTGCTTTAAATGATGCAAAGAAATATTTAAGGGTTTACCCGTGGAAGTATCTTGTCGTTGATGAGGGACATAGACTGAAAAACTCAAAGTGCAAGCTGGTGAAGGAGTTGAAATACTTAAATGTAGAAAATAAACTGCTTCTTTCCGGGACTCCACTTCAGAATGACTTGGCAGAGCTATGGTCGTTGTTGAACTTCATCTTGCCCGATATTTTTGCATCCCTTGAAGAATTTAAGTCATGGTTTAATCTGTCAGGAAAGTGCAACAATGGAGCAACCAAGGAAGAATTGGAAGAGAAAAGAAGAACCCAGGTAGTAGCCAAGCTGCATTCCATACTGCGGCCCTTTCTGCTGCGTAGGATGAAGGCTGATGTTGAGCTGACATTGCCTAGGAAGAAGGAGATCATTATCTATGCAAACATGACTGAGCATCAGGAGAATTTGCAGGATCATTTAATTAATAAGACTTTGGCGGACTATATGGAAGACAAGAAGTCAGTTGGACGTACACCAAAGTCGTTTAATAATTTGGTTATGCAACTTAGGAAAGTCTGTAACCATCCTGACCTCATAGAGGCAGCCTTTGAAGGTTCATTGCATTATCCTCCTGTGGATGAGATAGTTGCAAACTGTGGAAAATTCCGTTTGCTTGAACGGTTGTTGGAACGGTTGTTTGTAAAGAATCATAAAGTTCTGATATTCAGTCAGATGACTAAAGTTCTAGATTTAATGGATTATTATTTTGGTGAGAAGGGCTTTGAAGTTTGTAGGATTGATGGTAGCGTGAAACTGGATGAGAGAAAACGGCAGATCCAGGACTTCAATGATCCAAACAGCAATTGCAGAATCTTTCTTCTCTCCACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGACACATGCATTCTTTATGACAGCGATTGGAATCCTCAAGCTGACTTGCAGGCCATGGATAGATGTCACAGAATTGGTCAAACAAAACCAGTTCATGTTTACAGGCTCTCAACTGCTCAATCTGTTGAGTGTCGCATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGAGAAAGGACAGTTTCATCAAGAACGTACAACAAAGCCTTTTAATGTGAATGAAATGGAGGAAGAAGATGTTTTAGCATTGCTTCGTGATGAAGAAACAGCTGAAGATAAAATGATACAAACAGAAATTAGTGATGAAGACCTGGATAAACTCTTGGATCGCAGTGATCTTGTTGCTCCTGATCCAAACGACGATGACAAGGACTCAAAAGCTCCAAGTTGTGCCTTTCCCCTTAAAGGGCCTGGCTGGGAAGTGGTGATTCCAGCTGCAACTGGGGGCATGCTTTCTACTCTCAACAGTTAG 2241 0.4324 MGSEMAAKDQLNKDEPAESPTSVLGEEDVCVVKDNESSLISKSMVEEEEKLVKARIEEEEAEAQREEAADLTDTQFNKLDELLTQTKLYSEFLLEKMDDITLNAAEQESQSAEKKRGRGSKRKAACNTGKAKRAVAAMLTRSKESEKIEDVDLTEEERTEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGKGLDGPYMIIAPLSTLSNWQNEISRFAPSLPAVVYHGGRKERDEIRRRHMPRTIGPKFPIVITSFEIALNDAKKYLRVYPWKYLVVDEGHRLKNSKCKLVKELKYLNVENKLLLSGTPLQNDLAELWSLLNFILPDIFASLEEFKSWFNLSGKCNNGATKEELEEKRRTQVVAKLHSILRPFLLRRMKADVELTLPRKKEIIIYANMTEHQENLQDHLINKTLADYMEDKKSVGRTPKSFNNLVMQLRKVCNHPDLIEAAFEGSLHYPPVDEIVANCGKFRLLERLLERLFVKNHKVLIFSQMTKVLDLMDYYFGEKGFEVCRIDGSVKLDERKRQIQDFNDPNSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQADLQAMDRCHRIGQTKPVHVYRLSTAQSVECRMLKRAFSKLKLEHVVIEKGQFHQERTTKPFNVNEMEEEDVLALLRDEETAEDKMIQTEISDEDLDKLLDRSDLVAPDPNDDDKDSKAPSCAFPLKGPGWEVVIPAATGGMLSTLNS* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0579 746 MobiDBLite consensus disorder prediction 701 718 - -
Dod02g0579 746 SMART ultradead3 171 366 IPR014001 -
Dod02g0579 746 PANTHER SNF2/RAD54 HELICASE FAMILY 13 745 - -
Dod02g0579 746 Gene3D - 141 404 IPR038718 -
Dod02g0579 746 PANTHER BNAC07G16550D PROTEIN 13 745 - -
Dod02g0579 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 699 IPR027417 -
Dod02g0579 746 MobiDBLite consensus disorder prediction 1 28 - -
Dod02g0579 746 SMART helicmild6 527 611 IPR001650 -
Dod02g0579 746 MobiDBLite consensus disorder prediction 105 125 - -
Dod02g0579 746 Gene3D - 411 711 IPR027417 -
Dod02g0579 746 MobiDBLite consensus disorder prediction 701 722 - -
Dod02g0579 746 Coils Coil 42 74 - -
Dod02g0579 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 405 IPR027417 -
Dod02g0579 746 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 355 IPR014001 -
Dod02g0579 746 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 657 IPR001650 -
Dod02g0579 746 Pfam SNF2-related domain 178 476 IPR000330 GO:0005524|GO:0140658
Dod02g0579 746 CDD SF2_C_SNF 487 621 - -
Dod02g0579 746 Pfam Helicase conserved C-terminal domain 500 611 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0579 Dod-Chr2 7557122 7562850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0579 161 632 RAD5 or RAD16-like Gene Family AT3G16600 24.740 6.10e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod02g0579 SNF2_N 2.1e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0579 K19001 - gmx:100777687 1162.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0579 02 7557122 7562850 Dod02g0579 02 7557122 7562850 ECH