Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0563 ATGGAAAGGAGAGGGCAAGATAAGGAGTTAGAGATGCCAACCACTATGGGTTCTTATAATTCCTCTTCTTCTTCAAAGCTGTCTTCTCCAACTCTAGCTTCAACTACTGTAGGTGAAAGAAGTGACCAACAACCATCTCAAACTCATCACACAACGACACTAATCTTCAATGATCCACCTCAACATCTCTATCCTCCTCCTCATCTTCTTCCACCCAACAACCAGCTCCATCAATCCCAAAGACACAGCACAGATCCAGATCTAACCTCACCTCATCCTATTGCCACGACAAGCACCCCAATTGCATCAAACCCCACAAGAACAGCACCACCACCACCAACACCAACAACAACAACACAAACACCTGCAACAACAACTACTACAACCTCTTTCACCCCACTGATCAGGTACCGAGAATGTCTGAGAAACCACGCAGCCAGCATGGGAAGCCATGTGGTAGATGGTTGTGGGGAGTTCATGCCAAGTGGAGAAGAAGGCACTCCAGAATCATTGAGGTGTGCTGCTTGTGATTGCCACCGGAACTTCCACAGAAAAGAGGTTGAAGGATCCCCTCAACATCAACGTCATCATCATGCTTCCAACTATCAAAGCTATTACCCCAACAAACACAATGGTCACAGCAATATACCTTCACCTCATCATCTTCAGTTCCACACACCAACATCTTCTCTGCATCAACAGCATAGATTCTCTCATGGGGTTACTGCTGCTGCTGCTACTACACCTCCAGGAGGCCTTGTTCCGCCGGTGATGATGGCCTTTGGAGGAGGAGGAGGAGCTGAGTCATCAAGTGAAGATCTCAACATGTTTCAGTCCAACATAGTTGGAGGGCAGTTATCAGTGCAGGCACCACTGTCAAAGAAGAGGTTCAGAACAAAGTTCACACAGAATCAGAAGGATAGGATGATGGAGTTTGCTGAGAAGCTTGGGTGGAAGATCCAGAAACATGATGAGCAAGAAGTGCAGCAGTTTTGCTCCCAAGTTGGTGTCAAGAGACAGGTTTTCAAGGTTTGGATGCACAACAACAAGCAAGCTATGAAAAAGCAGCAGCAGATGTAA 1080 0.4667 MERRGQDKELEMPTTMGSYNSSSSSKLSSPTLASTTVGERSDQQPSQTHHTTTLIFNDPPQHLYPPPHLLPPNNQLHQSQRHSTDPDLTSPHPIATTSTPIASNPTRTAPPPPTPTTTTQTPATTTTTTSFTPLIRYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPESLRCAACDCHRNFHRKEVEGSPQHQRHHHASNYQSYYPNKHNGHSNIPSPHHLQFHTPTSSLHQQHRFSHGVTAAAATTPPGGLVPPVMMAFGGGGGAESSSEDLNMFQSNIVGGQLSVQAPLSKKRFRTKFTQNQKDRMMEFAEKLGWKIQKHDEQEVQQFCSQVGVKRQVFKVWMHNNKQAMKKQQQM* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0563 359 MobiDBLite consensus disorder prediction 1 131 - -
Dod02g0563 359 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 77 356 - -
Dod02g0563 359 MobiDBLite consensus disorder prediction 196 241 - -
Dod02g0563 359 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 136 187 IPR006456 -
Dod02g0563 359 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 294 351 IPR006455 -
Dod02g0563 359 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 137 186 IPR006456 -
Dod02g0563 359 Pfam ZF-HD protein dimerisation region 135 187 IPR006456 -
Dod02g0563 359 MobiDBLite consensus disorder prediction 13 58 - -
Dod02g0563 359 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 77 356 - -
Dod02g0563 359 Gene3D - 283 355 - -
Dod02g0563 359 MobiDBLite consensus disorder prediction 73 104 - -
Dod02g0563 359 SUPERFAMILY Homeodomain-like 291 355 IPR009057 -
Dod02g0563 359 MobiDBLite consensus disorder prediction 187 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0563 Dod-Chr2 7321063 7323533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0563 136 356 ZF-HD Transcription Factor Family AT2G18350 51.339 1.25e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dod02g0563 ZF-HD_dimer 3.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0563 - - vra:106776405 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0563 02 7321063 7323533 Dod02g0563 02 7321063 7323533 ECH