Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0559 ATGAAAACAGTGCGTAAGTGGGGTTTTGACTCGATTAAAGGATTAAACATTGACGGCAGAGCAGGAGGTTGCTTCTTAGTTATCATTCTAATTCAAGCTCTGGGACACTACCTTATGGGAATTGTTAGTGGTGAAGAAGTGGAGACATTACAGAATCCGCGCTCCTTCAAGGTACATGGTAAAATTTGCGTGGAACTCATGAAAATACTGGATAGAGTCTTAAGGGTATTTCCAGCCATAGAGGAGGCACGGCCTCGAAGCTCATCAGGAATAGAGACGCTTTGTTTGCTGAACAACGCAATTGATAAAGCCAAACTACTTCTCCAGCATTGCTCTGAATCCAGCAAACTCTACCTGGCTGTGACGGGGAATGCAATACTCGCAAGATGCCAAAAAGCAAGAAAATTATTAGAGCAAAGCTTGATCCAGATTCAGGGCATGGTACCAGTTATGTTAGCTGCAGAGGTTTCTGGAATAATTGATGATCTTGAGTGTGCTACATTTGTCCTGGACTCTGCTGAAGAGGAGGCTGGGAGGGTTGTTAATGAGTTGCTTGTGCCAAGTACTTCGTCTTCAGATTCAATGGATGATGCTGAAGTTAAAGCTCTTAAGTTTGCAGCACCAAGACTCAACATTACATCCGCCAAGGCCATCTTAATAGAGAAACGATCTATTAGGAAATTGCTGGATAAAGTTGGACCAAATGACCAGAAAAAGAAGAAGATTTTGGGATACTTTTACATTCTACTGAAAAATCATGGAAACCTCATTATTGGAGAACAAATGGAGCAGGTCCATCCTCGCAATGAAGAACCAATTGCCACTGAGAACTCTAGCCGCGATTCTCTACAAAGCCATCACGTTGAGTCTGGTCCATGCTTGAACTATGGTCAGTATAGAACTCAGATCAGTGAGTCGGGTAGAGTTACACCCCCTGAGGAATATAAGTGCCCAATATCATCAAGGTTGATGTATGATCCTGTTGTCATTGCCTCTGGTGTTACATATGAAAGGATGTGGATACAGAAGTGGTTTGACGAGGGTCATGATGTGTGCCCAAAAACTGGAAAGAAACTAGTGCATATGGGATTGACTCCTAATATTGCCATGAAGGACTTAATATCAAAATGGTGCAGAAACAGTGGAGTCTCCATTTCTGACCCAAGAAGGAAAGCAGAAGATTTTCACTCATTGGAAGCTTCCTCAACTTCCATTAAGAGTTTTGCAAGTTATATAAATGATTTTAACTTGCCACTGGATATGAGTAACATATCACTTGGATCATTGGATACTAGTTTTAATTCAGATGCCTCACATGGTAAGAACACACGTAGCTCAAATTTGATGCTGGCGAAGACTAGTGACAATTCTCTCAAACATCAGGCTCATGAACAGATGCGCGATGCAGATTTGATGCTTTTGTCTAAACTCCATGATCTTCAATGGGATTCTCAATGCCAGGTCGTTGAAGATCTGAAACATAATTTGAAACACAGTTACCAAGCTTTTTGTTCTGTGCCCCTGAGAATGTCATGGAACCACTTGTCAGATTTCTGA 1557 0.4168 MKTVRKWGFDSIKGLNIDGRAGGCFLVIILIQALGHYLMGIVSGEEVETLQNPRSFKVHGKICVELMKILDRVLRVFPAIEEARPRSSSGIETLCLLNNAIDKAKLLLQHCSESSKLYLAVTGNAILARCQKARKLLEQSLIQIQGMVPVMLAAEVSGIIDDLECATFVLDSAEEEAGRVVNELLVPSTSSSDSMDDAEVKALKFAAPRLNITSAKAILIEKRSIRKLLDKVGPNDQKKKKILGYFYILLKNHGNLIIGEQMEQVHPRNEEPIATENSSRDSLQSHHVESGPCLNYGQYRTQISESGRVTPPEEYKCPISSRLMYDPVVIASGVTYERMWIQKWFDEGHDVCPKTGKKLVHMGLTPNIAMKDLISKWCRNSGVSISDPRRKAEDFHSLEASSTSIKSFASYINDFNLPLDMSNISLGSLDTSFNSDASHGKNTRSSNLMLAKTSDNSLKHQAHEQMRDADLMLLSKLHDLQWDSQCQVVEDLKHNLKHSYQAFCSVPLRMSWNHLSDF* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0559 518 CDD RING-Ubox_PUB 315 357 IPR045210 -
Dod02g0559 518 MobiDBLite consensus disorder prediction 276 294 - -
Dod02g0559 518 SUPERFAMILY RING/U-box 305 385 - -
Dod02g0559 518 MobiDBLite consensus disorder prediction 268 294 - -
Dod02g0559 518 Pfam U-box domain 312 379 IPR003613 GO:0004842|GO:0016567
Dod02g0559 518 ProSiteProfiles U-box domain profile. 310 384 IPR003613 GO:0004842|GO:0016567
Dod02g0559 518 PANTHER U BOX DOMAIN-CONTAINING 43 507 - -
Dod02g0559 518 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 43 507 - -
Dod02g0559 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 385 IPR013083 -
Dod02g0559 518 SMART Ubox_2 314 377 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0559 Dod-Chr2 7265921 7271533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0559 49 506 U-box Gene Family AT4G36550 37.826 3.61e-89 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0559 - - gmx:100791627 629.787