Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0506 ATGGGTCGTGGGAAGATTGAGATAAAGTTGATTGAGAACCCAACGAACAGGCAAGTCACCTACTCCAAGCGGAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTCTCCCTCATCATGTTCTCCAAAAACAACAAGATGCACGAATACATAAGCCCTGGCCTTACGACTAAGAAGGTTATTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCATTCCCACTATGAGAAAATGCTTGAAAACTTGAAGAAACTGAAAGATATTAACAATAAACTCAGGAGACAGATCAGGCATAGGATTGGTGAGGGTTTGGACATGGACGATCTGAGCTTCCAGCAACTGCGCAGTCTTGAAGAGGATATGGTTTCTTCCATTGAGAAAATACGCGAACGGAAGTTCCATGTTATCAAAACCCGGACTGATACATGTAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAACGGGAATCTCCTGCTTGAGCTTGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCAAATGGCGCCTCCAACCTGTATGCATTCTGCCAGCACCATACTCATCTGAATCTTCATCACCATGGAGGAGGAACTGATGATTTGCGCCTTGCCTAG 681 0.4464 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKVIDQYQKTLGDIDLWHSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLDMDDLSFQQLRSLEEDMVSSIEKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELEKCVIHPQFLLHDEGDEESAVALANGASNLYAFCQHHTHLNLHHHGGGTDDLRLA* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0506 226 Coils Coil 85 105 - -
Dod02g0506 226 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Dod02g0506 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Dod02g0506 226 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Dod02g0506 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod02g0506 226 Pfam K-box region 82 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod02g0506 226 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 225 - -
Dod02g0506 226 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod02g0506 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod02g0506 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod02g0506 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod02g0506 226 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Dod02g0506 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod02g0506 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod02g0506 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0506 Dod-Chr2 6600484 6602866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0506 1 223 MADS-box Gene Family AT3G54340 48.684 2.51e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod02g0506 K-box 3.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0506 K09264 - gmx:100784496 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0506 02 6600484 6602866 Dod02g0506 02 6600484 6602866 ECH