Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0497 ATGGAACAAGAACAGCATCAGCAACATGAAACGACCGCCGCGACTCACGGCGGCGCGGTGGCGGATGCAGTTAGGGATTTGGAGGATTCGTCGCGGCTCGTCGGGGTGACCGTCGCGGTCGCCGGCGAAGTTGGCATGGCGGAGAGAGAGGGAGGCGGCGGAGGCGGCCCTAATCTGAAGGTCGCCGTCGTGGACGGCGGCGCGCTGCCTTTGAAGAGGAAGCGTGGCCGTCCGGCGAAGAATGCTCCGAGAACAGCGGCGGCGGCGGCCTCTTCTGCTCCGGTGAAGCAGCAGCAGAAGATTGAGGAAGAAGAGGAAGAGGATGTTTGCTTCATATGCTTCGATGGCGGAAGCCTCGTTCTCTGTGACCGCCGGGGTTGCCCTAAAGCGTATCATCCCGCGTGTATAAAGCGAGACGAGGCCTTTTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCACATATGTAGCTTTTGTCAGAAGGCGTCCCATTTTATGTGCTATACGTGTACGTATTCTGTATGCAAGGGATGTACAAAATATGCTGATTTTGTCTGTGTCAGAGGAAACAAAGGTTTTTGTGGCATGTGCATGAGAACGATAATGCTGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATCTTATTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTTCTTCGAGCTAGAAACCCATGGAAAGGTGCTTCTCCATTGAATTGTAAGGTTGAAGCTCCCCACGAACTTCTTCCGCTTAAAGACGACAAAGGTTCAGGTTCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAAAACAAGAAGTCTAAAAGACAGCAAAAGCTTCTTAGTAAGTGGGATTGCTTTGATCAGATAACCTCAGCTGGTGATCACAGTGTCTCTTTACCTGAATGCTCAAAATGGGCATCAAAGGATCTTCTAGAGTTTGTTGCGCATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAATATGTGAAGAAAAACAATCTTCGTGACCCGCAGCAGAAATGCCAAATTGTTTGTGACCCTCGGCTAGTGAAGTTGTTTGGAAAAGCACGTGTTGGCCACATTGAAATGCTAAAGCTTCTCGAATCCCACTTTCTTATAAAAGATGATGGCCCTGCAGGAGGGACTTCGAGAGCAGGAATTATTGATGCTTTTGCTAGTGAAGGGGACACCATTGACAATGACAACAAACAGTTGATGCAGGTCAGTGATAAGAAATGCAAATCAGATAAAAAGGCTGATGTGGTAATGCCGCAAAACAATCCAGATGCATATGCTGCAATAAATGCTCACAACATCAACTTGATCTACTTGCGGCGGAGTCTGGTGGAGAATCTAACTGAAGATGCTGAAAAGATTCATGACAAGATTGTTGGTTCATTTGTGCGGATAAAAATCTCTAGCAGTGATAAAAAACAAGAGATGTATAGGCTTGTCCAAGTTGTAGGTACAAGTAAGGCTGCTGAACCTTACGAAATTGGCACAAGAACAACCGATATTGTGCTTGAAATTTTAAACTTAAACAGGAAAGAGGTCATACCAATAGTTGAGATATCAAATCAGGAGTTCTCCGAGGATGAATGCAAGCGATTGCGTCAAAGTATAAAATATGGGCTCTCCAAGAGATTGACTGTGGGAGAGATTATGGACAAAGCAGTGACATTTCAAGAAATGAGAGTTAATGATTTGCTGGAAGCTGAGATATTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAATATCCTTTACCATTTTTACTAGAATGTGTGGAGAAGTTACAGATACTAAACTCACCAGAGGAACGACAGCGCAGGCTGCGTGAAGTTCCGGAGGTACACTCTGACCCAAATTTGGATTTAATGTTCGAGTCTGATGAAGATGCTGGAGAGTCCGATGAAAGGAAGCAAGATGGCAATATATGGTCAAAATATCCTGCATTTGACAGAAGAGAGAAGGAGGCTAGTTTGCCTAGAAGTTGTGATAGTGACTTGAATGATGATAGGTGCAAAACACAAGACTTGCCTGCTGCCGGTGAATCGAATGGGAATGTAGACGTGGCAAAATATCAGATCAACCCTAATAATAATACAGCAATGGATGATAGCACTAAATTAGTTGTGAGATCAGAAGCATCTGGGGTTGCATTGGACGTTTCATCATCTCTTCACTCTATAGGGATGGAGCAGTCACTTAATGAATTTTTGAATGATAAATCATGGCATTATCAAGATCCATCTGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGCAAGTGGACATTTCCCTCCAGATCTCAGAATATGGAGGATAGATGAGAAACAAGACAACTCTATATTGTTAGCAGATGCACTCAGTGGAAAGTGTTTTAAAAATGTTTCATTGCCATATGACAGCCAACTGCTGTCTTTAGGGTCCAGTGTTGCATTGGATAGTAAAGATAATAGTCAGGATGGTGGGAGTAATGCAACAAGGAGTGAAATTCATGCAGACAACCAAATTATTGAGCAAAGCAGGGAGCAAAAAAAGGCGGATGATACTTGTACCCAGTCTGATGGTAAAGATGAATCTGTTAGGAGCAATGGATGGCATGACCAGCCCCATGCATACCCTTCCCAACCTTCAATAGACTTGTCTGAGAAATTGAAGGAGAATCCGGGAGATAAATTAAAGGAAGGCCATCGGATTGAGGGAAACCCAGCAGATAATGGAAATCATGGCTCAAACAGGAATGCTGAGGGTCGGAGCAACAGTGGGCAGAGTTATCAAAAGCAATCATACAGTGAAGAGAATTCAGGGCAATCTTCTGAACAGAACTGGAGAGGCCCCCATGTAAATAGTTCTTCCAGTTGTGTGGTTACCACATCAGCTGATATTTCCATGACAAAGCCGTCACCACTTAAGCTAGGATTTGATTTGCATAGTTCCCCATCCCATCCAGCTTGTAATACTACTTGGCAAGCAATCATTGGCGAACCTACTGATTTTAGCTCAATAGCTGATGTTGATGAATCAGTTTCTGATCTGTTGGCTGAAGTTGAAGCAATGGAATCACTTGGTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGTCAGGAATTGACTGGCAGTTCTAAAAATGATTGTCTCAGTTTTGCAGATGGGCTTAGCCCAGTGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACAGGTGACTTGCACTTACAATCTCAGTCCACAGCAGCTGAGGAACCATTACGGCAAACAGATGTACATCATCATCAAAGAACAACTGGGGGACATTCCTCAAGAAGTTCTGAAGTTAAGGTGAGTACAAAGAACATTAGTGTTTCAGGTTATCAATGGGAGTCGGGCTCAGATAATTCAGCCATTGGTCCATCTGCTGCAACCTGGGGCATTGCTACAGACCCCACTTGGAGACCTGGGTCAGAGAATACAAACTTGGCATGGGGTGGACTGGATCGAGGGAATGTAAACATGGGTTGGGGAGTGGGGCAGTCAGCAGTGCAAGAGAACAGGAGCACAAATTCATACAATCCCGGAGTAACTCCAAGCTTTGGTGGAAGCCAAACAAGATATGGCAGCGATCGATTTTCTATGCCCAAAGATCGGGGTTTTCATGGTCATGGTAGGGAATCGGGTTCTGGCAGAGGCAGAACTATGTGGAACAAGCAACCTTTATCTGGTTTTGGAAATGGAGGTTCACACAGGCCTCTGCCCAAAGGGCAACGAGTTTGTAAATTTTATGAAAGTGGGCACTGTAAGAAGGGAGCATGCTGTGATTATTATCACCCGTGA 3960 0.446 MEQEQHQQHETTAATHGGAVADAVRDLEDSSRLVGVTVAVAGEVGMAEREGGGGGGPNLKVAVVDGGALPLKRKRGRPAKNAPRTAAAAASSAPVKQQQKIEEEEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSFCQKASHFMCYTCTYSVCKGCTKYADFVCVRGNKGFCGMCMRTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKVYWILLKGKLSLTFDELLRARNPWKGASPLNCKVEAPHELLPLKDDKGSGSENSCIDIESNNLKNKKSKRQQKLLSKWDCFDQITSAGDHSVSLPECSKWASKDLLEFVAHMKNGDTSLLSQFDVQTLLLEYVKKNNLRDPQQKCQIVCDPRLVKLFGKARVGHIEMLKLLESHFLIKDDGPAGGTSRAGIIDAFASEGDTIDNDNKQLMQVSDKKCKSDKKADVVMPQNNPDAYAAINAHNINLIYLRRSLVENLTEDAEKIHDKIVGSFVRIKISSSDKKQEMYRLVQVVGTSKAAEPYEIGTRTTDIVLEILNLNRKEVIPIVEISNQEFSEDECKRLRQSIKYGLSKRLTVGEIMDKAVTFQEMRVNDLLEAEILRLNHLRDRASEKGHRKEYPLPFLLECVEKLQILNSPEERQRRLREVPEVHSDPNLDLMFESDEDAGESDERKQDGNIWSKYPAFDRREKEASLPRSCDSDLNDDRCKTQDLPAAGESNGNVDVAKYQINPNNNTAMDDSTKLVVRSEASGVALDVSSSLHSIGMEQSLNEFLNDKSWHYQDPSGKVQGPFSMLQLYKWNASGHFPPDLRIWRIDEKQDNSILLADALSGKCFKNVSLPYDSQLLSLGSSVALDSKDNSQDGGSNATRSEIHADNQIIEQSREQKKADDTCTQSDGKDESVRSNGWHDQPHAYPSQPSIDLSEKLKENPGDKLKEGHRIEGNPADNGNHGSNRNAEGRSNSGQSYQKQSYSEENSGQSSEQNWRGPHVNSSSSCVVTTSADISMTKPSPLKLGFDLHSSPSHPACNTTWQAIIGEPTDFSSIADVDESVSDLLAEVEAMESLGGGLESPTSIMKCGQELTGSSKNDCLSFADGLSPVLDAGKGDALSSTGDLHLQSQSTAAEEPLRQTDVHHHQRTTGGHSSRSSEVKVSTKNISVSGYQWESGSDNSAIGPSAATWGIATDPTWRPGSENTNLAWGGLDRGNVNMGWGVGQSAVQENRSTNSYNPGVTPSFGGSQTRYGSDRFSMPKDRGFHGHGRESGSGRGRTMWNKQPLSGFGNGGSHRPLPKGQRVCKFYESGHCKKGACCDYYHP* 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0497 1319 ProSitePatterns Zinc finger PHD-type signature. 110 170 IPR019786 -
Dod02g0497 1319 MobiDBLite consensus disorder prediction 652 666 - -
Dod02g0497 1319 MobiDBLite consensus disorder prediction 932 950 - -
Dod02g0497 1319 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 21 1018 - -
Dod02g0497 1319 Gene3D - 468 597 IPR036128 GO:0003677
Dod02g0497 1319 MobiDBLite consensus disorder prediction 883 913 - -
Dod02g0497 1319 ProSiteProfiles GYF domain profile. 783 837 IPR003169 GO:0005515
Dod02g0497 1319 SMART rtf1 467 577 IPR004343 GO:0003677
Dod02g0497 1319 CDD GYF 783 838 IPR003169 GO:0005515
Dod02g0497 1319 ProSiteProfiles Zinc finger C3H1-type profile. 1294 1319 IPR000571 GO:0046872
Dod02g0497 1319 MobiDBLite consensus disorder prediction 652 685 - -
Dod02g0497 1319 Coils Coil 601 621 - -
Dod02g0497 1319 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 21 1018 - -
Dod02g0497 1319 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 1025 1319 - -
Dod02g0497 1319 SMART gyf_5 784 839 IPR003169 GO:0005515
Dod02g0497 1319 Pfam SWIB/MDM2 domain 334 405 IPR003121 -
Dod02g0497 1319 MobiDBLite consensus disorder prediction 1110 1159 - -
Dod02g0497 1319 MobiDBLite consensus disorder prediction 1 26 - -
Dod02g0497 1319 MobiDBLite consensus disorder prediction 953 1002 - -
Dod02g0497 1319 Gene3D SWIB/MDM2 domain 320 413 IPR036885 -
Dod02g0497 1319 SUPERFAMILY SWIB/MDM2 domain 330 406 IPR036885 -
Dod02g0497 1319 MobiDBLite consensus disorder prediction 698 719 - -
Dod02g0497 1319 SUPERFAMILY FYVE/PHD zinc finger 96 154 IPR011011 -
Dod02g0497 1319 SUPERFAMILY GYF domain 780 836 IPR035445 -
Dod02g0497 1319 SMART swib_2 332 410 IPR019835 -
Dod02g0497 1319 Pfam GYF domain 786 827 IPR003169 GO:0005515
Dod02g0497 1319 MobiDBLite consensus disorder prediction 861 882 - -
Dod02g0497 1319 CDD SWIB-MDM2_like 330 405 - -
Dod02g0497 1319 Gene3D - 785 840 IPR035445 -
Dod02g0497 1319 MobiDBLite consensus disorder prediction 698 728 - -
Dod02g0497 1319 Pfam Plus-3 domain 472 575 IPR004343 GO:0003677
Dod02g0497 1319 MobiDBLite consensus disorder prediction 1251 1268 - -
Dod02g0497 1319 MobiDBLite consensus disorder prediction 1226 1250 - -
Dod02g0497 1319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 201 IPR013083 -
Dod02g0497 1319 CDD PHD5_NSD 109 154 - -
Dod02g0497 1319 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 1025 1319 - -
Dod02g0497 1319 SMART PHD_3 109 155 IPR001965 -
Dod02g0497 1319 MobiDBLite consensus disorder prediction 1226 1275 - -
Dod02g0497 1319 SUPERFAMILY CCCH zinc finger 1294 1318 IPR036855 GO:0046872
Dod02g0497 1319 MobiDBLite consensus disorder prediction 861 1002 - -
Dod02g0497 1319 Pfam PHD-like zinc-binding domain 91 161 - -
Dod02g0497 1319 ProSiteProfiles SWIB/MDM2 domain profile. 324 407 IPR003121 -
Dod02g0497 1319 MobiDBLite consensus disorder prediction 1117 1132 - -
Dod02g0497 1319 SUPERFAMILY Plus3-like 468 597 IPR036128 GO:0003677
Dod02g0497 1319 ProSiteProfiles Plus3 domain profile. 467 600 IPR004343 GO:0003677
Dod02g0497 1319 MobiDBLite consensus disorder prediction 71 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0497 Dod-Chr2 6480950 6489967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0497 101 187 PHD Transcription Factor Family AT4G14920 34.483 1.02e-07 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Dod02g0497 Plus-3 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0497 - - aprc:113869503 1855.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0497 02 6480950 6489967 Dod02g0497 02 6480950 6489967 ECH