Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0484 ATGACCAGTGCCACCGAAAAAGCTGATGCTCCCGCCGTCGAACTTCCGACGGAGGACGTGAAAGCGCCGGAGGAGCCCAAGCCCAAGCCCGCCAAGGAGAAAAAGCCCAAGGCTCCCAGAGAGAATAAGCCAAAGCAGCCCAAAACCGCCTCTCACCCTCCGTATCTTCAGATGATTAAGGAGGCGTTGTTGGCTTTGAACGAGAAAGGTGGTTCGAGTCCTTACGCAATAGCAAAGTACATGGAGGAGAAGCACAAGGCGGTTCTCCCTGCGAATTTCAGGAAGATCCTTGCGTTGCAGCTGAAGAACCAAGCCGCAAGAGGGAAGCTCGTGAAGATCAAGGCCTCATACAAGTTATCTGAGGCTGCGAAGAAGGAGAAGAAGGAAAGCGCCGCCGCCGCCGCTAAGGCTCCGAAGAAGGCCACCGCGGAGAAGCGGAACGAGCGCCCCAAGCGGAAAAGAGTTGCCACCGTTGCTGCTGCTGCTGCTGCGGCTCCGAAGAGCAAGAAAACAGAGAAGGCTGCGAAAGGAACGGCGAAGAAGGTTGGTGCGAGGAAGACGAAGAAGGTTTCGACTCCTGCGAAGCCCAAACAGCCCAAGTCCATCAAGTCTCCGGCCAAGAGGGCCAGGAAGGCAACTGCTGCTGCCTGA 651 0.5668 MTSATEKADAPAVELPTEDVKAPEEPKPKPAKEKKPKAPRENKPKQPKTASHPPYLQMIKEALLALNEKGGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNQAARGKLVKIKASYKLSEAAKKEKKESAAAAAKAPKKATAEKRNERPKRKRVATVAAAAAAAPKSKKTEKAAKGTAKKVGARKTKKVSTPAKPKQPKSIKSPAKRARKATAAA* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0484 216 SMART h15plus2 49 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod02g0484 216 MobiDBLite consensus disorder prediction 121 155 - -
Dod02g0484 216 CDD H15 49 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod02g0484 216 PANTHER HISTONE H1 7 214 - -
Dod02g0484 216 PRINTS Histone H5 signature 65 82 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod02g0484 216 PRINTS Histone H5 signature 194 213 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod02g0484 216 PRINTS Histone H5 signature 38 59 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod02g0484 216 PRINTS Histone H5 signature 139 153 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod02g0484 216 MobiDBLite consensus disorder prediction 1 56 - -
Dod02g0484 216 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 51 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod02g0484 216 MobiDBLite consensus disorder prediction 12 47 - -
Dod02g0484 216 MobiDBLite consensus disorder prediction 121 216 - -
Dod02g0484 216 Pfam linker histone H1 and H5 family 52 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod02g0484 216 Gene3D - 46 134 IPR036388 -
Dod02g0484 216 PANTHER HISTONE H1 7 214 - -
Dod02g0484 216 SUPERFAMILY "Winged helix" DNA-binding domain 48 131 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0484 Dod-Chr2 6342261 6344086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0484 39 119 Single Myb Histone (SMH) Gene Family AT1G72740 39.506 1.01e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0484 K11275 - gmx:100500169 192.971