LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod02g0484	ATGACCAGTGCCACCGAAAAAGCTGATGCTCCCGCCGTCGAACTTCCGACGGAGGACGTGAAAGCGCCGGAGGAGCCCAAGCCCAAGCCCGCCAAGGAGAAAAAGCCCAAGGCTCCCAGAGAGAATAAGCCAAAGCAGCCCAAAACCGCCTCTCACCCTCCGTATCTTCAGATGATTAAGGAGGCGTTGTTGGCTTTGAACGAGAAAGGTGGTTCGAGTCCTTACGCAATAGCAAAGTACATGGAGGAGAAGCACAAGGCGGTTCTCCCTGCGAATTTCAGGAAGATCCTTGCGTTGCAGCTGAAGAACCAAGCCGCAAGAGGGAAGCTCGTGAAGATCAAGGCCTCATACAAGTTATCTGAGGCTGCGAAGAAGGAGAAGAAGGAAAGCGCCGCCGCCGCCGCTAAGGCTCCGAAGAAGGCCACCGCGGAGAAGCGGAACGAGCGCCCCAAGCGGAAAAGAGTTGCCACCGTTGCTGCTGCTGCTGCTGCGGCTCCGAAGAGCAAGAAAACAGAGAAGGCTGCGAAAGGAACGGCGAAGAAGGTTGGTGCGAGGAAGACGAAGAAGGTTTCGACTCCTGCGAAGCCCAAACAGCCCAAGTCCATCAAGTCTCCGGCCAAGAGGGCCAGGAAGGCAACTGCTGCTGCCTGA	651	0.5668	MTSATEKADAPAVELPTEDVKAPEEPKPKPAKEKKPKAPRENKPKQPKTASHPPYLQMIKEALLALNEKGGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNQAARGKLVKIKASYKLSEAAKKEKKESAAAAAKAPKKATAEKRNERPKRKRVATVAAAAAAAPKSKKTEKAAKGTAKKVGARKTKKVSTPAKPKQPKSIKSPAKRARKATAAA*	217

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod02g0484	216	SMART	h15plus2	49	116	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Dod02g0484	216	MobiDBLite	consensus disorder prediction	121	155	-	-
	Dod02g0484	216	CDD	H15	49	120	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Dod02g0484	216	PANTHER	HISTONE H1	7	214	-	-
	Dod02g0484	216	PRINTS	Histone H5 signature	65	82	IPR005819	GO:0000786\|GO:0003677\|GO:0006334\|GO:0030527
	Dod02g0484	216	PRINTS	Histone H5 signature	194	213	IPR005819	GO:0000786\|GO:0003677\|GO:0006334\|GO:0030527
	Dod02g0484	216	PRINTS	Histone H5 signature	38	59	IPR005819	GO:0000786\|GO:0003677\|GO:0006334\|GO:0030527
	Dod02g0484	216	PRINTS	Histone H5 signature	139	153	IPR005819	GO:0000786\|GO:0003677\|GO:0006334\|GO:0030527
	Dod02g0484	216	MobiDBLite	consensus disorder prediction	1	56	-	-
	Dod02g0484	216	ProSiteProfiles	Linker histone H1/H5 globular (H15) domain profile.	51	121	IPR005818	GO:0000786\|GO:0003677\|GO:0006334

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod02g0484	Dod-Chr2	6342261	6344086	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod02g0484	39	119	Single Myb Histone (SMH) Gene Family	AT1G72740	39.506	1.01e-08	52.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod02g0484	K11275		-	gmx:100500169	192.971

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