Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0417 ATGACTCTCAAGAGCTTGGTATCGCTTGTCTTGGATTTAATTGGTCTAGCAGAGGGAGCAAGGAGCAAGGATGCCCCTTTACAGCACCTGCTATCCAGCACTACTACTGCCCCACAAAAGTCCAATCAGCAATTATCTGAATCTGCAGCGTCATCATCCAATCTAATGGAGAATAGTGAGGTTGGTTGGTGTTGCGTGTGCTTGTCAAGGTTAAAGGACAAAGATGAAATCCGAGTTCTTCCTTGCTTGCACAAGTTCCATATGATTTGTGTAAATAGATGGCTCAAGGGTCACCACAAGACCTGTCCACTCTGCCGTTTCTCAATGGGAGGCGAGGAGAATTCTCGTCGTGCCGAAATGTTCACTGAAGAGATGGTAATATGGTTTTCATCTTTCCATATAGCTGGTATGTAA 414 0.4493 MTLKSLVSLVLDLIGLAEGARSKDAPLQHLLSSTTTAPQKSNQQLSESAASSSNLMENSEVGWCCVCLSRLKDKDEIRVLPCLHKFHMICVNRWLKGHHKTCPLCRFSMGGEENSRRAEMFTEEMVIWFSSFHIAGM* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0417 137 CDD mRING-H2-C3H2C2D_ZSWM2 64 106 - -
Dod02g0417 137 Pfam Ring finger domain 64 106 IPR001841 -
Dod02g0417 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 110 IPR013083 -
Dod02g0417 137 SMART ring_2 64 105 IPR001841 -
Dod02g0417 137 ProSiteProfiles Zinc finger RING-type profile. 64 106 IPR001841 -
Dod02g0417 137 PANTHER GB|AAF27103.1 8 122 - -
Dod02g0417 137 PANTHER TARGET OF ERK KINASE MPK-1 8 122 - -
Dod02g0417 137 SUPERFAMILY RING/U-box 63 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0417 Dod-Chr2 5605497 5606547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0417 64 110 C3H Transcription Factor Family AT1G80400 51.064 8.33e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0417 - - gmx:100809233 194.126