Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0410 ATGGAGTTCGTGCCAAATCCGTGCCCTTTGCGTTCCTCCCTGTTCGGTTCCTTTGGGAATCTTGTTGAGAGGGTTAAGCGGATTGGTACCCTCGCAGTCTCTGCGGTTCTTGGGAACATCTTCTCTGCGATCTTGACCTTCTGCTTCGCATTAGTGGGCACTTTGTTGGGGGCTATGACTGGAGCTTTGATAGGCCAAGAGACTGAGAGTGGCTTCATTCGAGGTGCTGCTGTTGGTGCCATTTCTGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCCTCTCTTGTTCTTTGGCAGTCTGATGAGTCTGGGATTGGTTGTCTCTTATACCTGATTGATGTTATTGCTAGCTTATTGAGTGGGAGACTAGTGCGTGAGAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAAACCACGTTTGATGAGGTTCAAAACATCTTTGACACGGGTGGTGCAAAGGGTTTATCCGGTGACTTGGTTGAAAGAATCCCGAAAATCAAAATTACTAGTGACAACAATGTTGATGCTTCTGGTGAAAGAGTTTCTTGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGCGAGATAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTATTCAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 708 0.4661 MEFVPNPCPLRSSLFGSFGNLVERVKRIGTLAVSAVLGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETTFDEVQNIFDTGGAKGLSGDLVERIPKIKITSDNNVDASGERVSCSVCLQDFQLGEIVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0410 235 SUPERFAMILY RING/U-box 189 235 - -
Dod02g0410 235 CDD RING-H2_PA-TM-RING 190 232 - -
Dod02g0410 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 12 235 - -
Dod02g0410 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 235 IPR013083 -
Dod02g0410 235 SMART ring_2 190 231 IPR001841 -
Dod02g0410 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 12 235 IPR044523 -
Dod02g0410 235 Pfam Ring finger domain 189 232 IPR001841 -
Dod02g0410 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0410 Dod-Chr2 5526077 5528089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0410 20 235 C3H Transcription Factor Family AT5G66070 78.241 1.41e-119 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0410 - - gmx:100807641 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0410 02 5526077 5528089 Dod05g0133 05 1795904 1798463 PCT