Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0403 ATGGCGGAAACCGGTGACGGCAATGGCGTCATCTACCTCCACGGCGACCTCGACCTCAAAATCATAGAAGCTCGAAGCCTGCCTAACATGGACATCGTCTCAGAGCGCTTCCGCCGCTGCATCACCGCCTGCGACACAATCAAATTCCACTCCTCCGACGCCGCCGACGACCGCGGCGGAAGCAACAACCCCCGCGCCGCCCACCGCCCCCACGCGAAAATCATCACCAGCGACCCGTACGTCACCGTCTCCGTCCCTCAGGCCACCGTGGCGCGCACGCGCGTGATCCACAACTCGCAGAACCCTCGCTGGAACGAGCGGTTCAACATCCCGCTCGCTCACCCTGTCGCGGAGCTCGAGTTCCGCGTCAAGGACGACGACACATTCGGCGCCGAGACCATGGGATCGGTGAAGATTCAGGCGACGCAGATCGCCGCCGGCAAGCTTATCTCCGGCTGGTTCCCGATCATCGGATCCTCCGGAAAGCCGCCGAAGCCGAACGCCGCGCTCTGCATCGAGATGCAGTTCACGGCGGTAAATGACAACGTGCTTTACCGGCGCGGCATCGCCTCCGATCCGGAGCACGGCGGCGTGAGGCACACGTACTTTCCGGTGAGGAAAGGGAGCGCCGTAAGGCTGTACCAGGACGCGCATTGCCCCGAGGGTTTGGTTCCGGAGATTCGGCTCGATGATGGAAAGGTTTTCAAGCAACCAAAGTGCTGGGAAGACATATGCTATGCTATCTCTGAGGCTCATCACATGGTGTACCTTGTTGGTTGGTCGATTTACCACAAGATTAGGCTCGTCAGAGAGCCTACGAGGCCTTTGCCCAGAGGTGGAGACTTGACCCTTGGTGAGTTGCTCAAGTATAAGTCTGAAGAAGGAGTTAGGGTTCTGTTGCTGGTTTGGGATGATAAGACTTCACATGATAAGTTCTTCTTCAAGTCGGCTGGAGTGATGCAGACTCATGATGAGGAAACGAGAAAGTTTTTTAAACATTCCTCTGTTACGTGTGTTCTGGCACCTCGGTATGCTAGCAGCAAGATGAGCTTCTTGAAGCAACAGGTTGTTGGGACCGTCTTCACACACCACCAAAAATGTGTTATTGTGGACACACAGGCTGCTGGTAATGACCGAAAGATAACTGCTTTTATAGGAGGTCTTGATCTATGTGATGGTCGCTATGACACACCTCAGCATCGACTTTTTCGTGATCTTGACACTGTATTCGAGGGTGATTTCCACAATCCTACATTTCCTGCTGGAACAAGGGCTCCACGGCAACCATGGCATGATTTACACTGCAGAATAGATGGGCCTGCTGCATATGATGTTCTTATTAATTTTGAGCAACGATGGAGAAAATCAACTAGGTGGAAAGAGTTTGCTATAATTTTCTCAAAAGCTTCTTCTCGTTGGCAGGATGATGCTTTAATAAGAATAGAACGCATCTCGTGGATAGTAAGTCCTTCCATTAGTTCCACAAAGGAAAATTATACGATTGTTCCAGAGGATGACCCTAAAGTATGGGTTTCTAGAGAAGAAGATCCTGAAAACTGGCATGTTCAGATCTTCCGCTCAATTGACTCGGGATCCCTGAAAGGATTTCCCAAGCGTGTTGATGTTGCTCTGAACCAGAATCTTATCTGTGCTAAAGATTTGGTTATAGACAAAAGCATTCAAACAGGATACATTCAAGCAATCAGATCTGCTCAACATTTCATTTATATTGAAAACCAATACTTTATTGGATCATCATATGCATGGCCATCTTATAAAGATGCAGGGGCTGATAACCTTATCCCAATGGAACTGGCGCTGAAAATTGCTAGTAAAATCAGAGCAAATGAGAGATTTGCTGTTTATATTGTTTTACCAATGTGGCCAGAAGGTGATCCCAAAACTGGAGCTATGCAAGAAATCCTCTTTTGGCAGAGCCAGACAATGCAAATGATGTATGAAGTAGTTGCTAGAGAATTGAAATCAATGCAACTTGCTGATGTGCACCCACAAGAGTACCTCAACTTTTATTGCCTTGGTAATCGGGAAGCATTTAATAAAGAAACCTCAAGTTCAAATGGTGCTCCGGTCTCAAGTGCATATGAAAAAGGCCGATTTATGATTTATGTGCATGCTAAGGGGATGATTGTTGATGATGAGTATGTCATAGTGGGGTCTGCTAATATAAATCAAAGATCTATGGCTGGCACTAAAGATACTGAGATAGCTATGGGTGGATATCAGCCCCATTACACTTGGCCTGCGAAGAAACGACATCCTCGTGGTCAGATTTATGGTTACAGAAAGTCACTATGGGCAGAGCATCTTGGCATGTTAGAAGAAACTTTTGAGGAACCAGAGAGATTGGAGTGCGTGCGTAGAGTGAATGAAATTGCAGACGATAATTGGAGAAAATTCGTTGCTCATGATTTTTCAGAGCTGCAAGGACATATTCTTAGGTATCCTTTACAGGTAGATTTCGATGGGAAGGTTAGCTCCCTTCCTGATTGTGAGAATTTCCCAGATGCTGGCGTCACTAGTCACTTCAAGGCAATGGTAACATTAAAAGGATTGAAAGCGGATTCTCCTGTGAGAAGGAATTCAAGATCCCCTTCCCCATGGAGAGCTCAATCAAGGTCGAGATCCAGGTCAAGGTCCAGGTCTAGGCCTAGGTCTAGGTCAAGATCTATTCCAAGACAAAGGCCAAGATCCCGCTCTAGAAGTCGTGGCAGGTCAAGATCAAGAAGTCATGAAAGGGATGAGACTCACAATGCTGGGAATACACTTTATGTGACAGGCCTATCTTCAAGGGTCACTGAGAGAGACTTAGAGGAGCATTTCTCAAAGGAAGGAAAAGTTGCTTCATGTTTCCTTGTGGTGGAGCCTCGAACTCGTATTTCTCGTGGTTTTGCCTTTATTACAATGGATTCTGTTGAGGATGCGAACCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGAGGAATTCATTGCATCAGCTATGTTGGCAGCAATCAAAGATGATCAGTTCATCCATGTCAACTTTAGTGAAACAGCTTGATCAATGGCAAGCTTAA 3099 0.4724 MAETGDGNGVIYLHGDLDLKIIEARSLPNMDIVSERFRRCITACDTIKFHSSDAADDRGGSNNPRAAHRPHAKIITSDPYVTVSVPQATVARTRVIHNSQNPRWNERFNIPLAHPVAELEFRVKDDDTFGAETMGSVKIQATQIAAGKLISGWFPIIGSSGKPPKPNAALCIEMQFTAVNDNVLYRRGIASDPEHGGVRHTYFPVRKGSAVRLYQDAHCPEGLVPEIRLDDGKVFKQPKCWEDICYAISEAHHMVYLVGWSIYHKIRLVREPTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKFFFKSAGVMQTHDEETRKFFKHSSVTCVLAPRYASSKMSFLKQQVVGTVFTHHQKCVIVDTQAAGNDRKITAFIGGLDLCDGRYDTPQHRLFRDLDTVFEGDFHNPTFPAGTRAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKSTRWKEFAIIFSKASSRWQDDALIRIERISWIVSPSISSTKENYTIVPEDDPKVWVSREEDPENWHVQIFRSIDSGSLKGFPKRVDVALNQNLICAKDLVIDKSIQTGYIQAIRSAQHFIYIENQYFIGSSYAWPSYKDAGADNLIPMELALKIASKIRANERFAVYIVLPMWPEGDPKTGAMQEILFWQSQTMQMMYEVVARELKSMQLADVHPQEYLNFYCLGNREAFNKETSSSNGAPVSSAYEKGRFMIYVHAKGMIVDDEYVIVGSANINQRSMAGTKDTEIAMGGYQPHYTWPAKKRHPRGQIYGYRKSLWAEHLGMLEETFEEPERLECVRRVNEIADDNWRKFVAHDFSELQGHILRYPLQVDFDGKVSSLPDCENFPDAGVTSHFKAMVTLKGLKADSPVRRNSRSPSPWRAQSRSRSRSRSRSRPRSRSRSIPRQRPRSRSRSRGRSRSRSHERDETHNAGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDSVEDANRCIKYLNQSVLEGRYITVERNSLHQLCWQQSKMISSSMSTLVKQLDQWQA* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0403 1032 MobiDBLite consensus disorder prediction 865 879 - -
Dod02g0403 1032 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 359 394 IPR001736 GO:0003824
Dod02g0403 1032 SMART C2_3c 16 153 IPR000008 -
Dod02g0403 1032 PANTHER PHOSPHOLIPASE D DELTA 9 844 - -
Dod02g0403 1032 Gene3D - 866 1006 IPR012677 -
Dod02g0403 1032 ProSiteProfiles C2 domain profile. 1 154 IPR000008 -
Dod02g0403 1032 Pfam Phospholipase D Active site motif 359 394 IPR001736 GO:0003824
Dod02g0403 1032 Pfam Phospholipase D Active site motif 707 733 IPR001736 GO:0003824
Dod02g0403 1032 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 927 1005 IPR000504 GO:0003723
Dod02g0403 1032 Pfam Phospholipase D C terminal 780 844 IPR024632 -
Dod02g0403 1032 Pfam C2 domain 15 156 IPR000008 -
Dod02g0403 1032 CDD C2_plant_PLD 9 177 - -
Dod02g0403 1032 Gene3D Endonuclease Chain A 530 752 - -
Dod02g0403 1032 PANTHER PHOSPHOLIPASE D 9 844 IPR015679 -
Dod02g0403 1032 CDD RRM_RBMX_like 926 1002 - -
Dod02g0403 1032 MobiDBLite consensus disorder prediction 860 931 - -
Dod02g0403 1032 SMART rrm1_1 928 1001 IPR000504 GO:0003723
Dod02g0403 1032 Gene3D Endonuclease Chain A 231 478 - -
Dod02g0403 1032 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 706 733 IPR001736 GO:0003824
Dod02g0403 1032 SUPERFAMILY RNA-binding domain, RBD 878 1002 IPR035979 GO:0003676
Dod02g0403 1032 SUPERFAMILY Phospholipase D/nuclease 201 469 - -
Dod02g0403 1032 MobiDBLite consensus disorder prediction 880 912 - -
Dod02g0403 1032 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 177 IPR035892 -
Dod02g0403 1032 SUPERFAMILY Phospholipase D/nuclease 558 788 - -
Dod02g0403 1032 SMART pld_4 706 733 IPR001736 GO:0003824
Dod02g0403 1032 SMART pld_4 359 394 IPR001736 GO:0003824
Dod02g0403 1032 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 929 998 IPR000504 GO:0003723
Dod02g0403 1032 Gene3D C2 domain 14 185 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0403 Dod-Chr2 5414951 5442983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0403 10 697 Phospholipase D Gene Family (Wang group) AT4G35790 70.537 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0403 K01115 - gmx:100814486 1454.5