Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0387 ATGGACAATGAAGAAGAAGAGGAAGAGGAGAATGAGGAGGTCAGAAGAAAACAGAAGATAACGATAAAGGTGGTGTCAAGAAGGGCTTCTTCATCGTCCAGCAGCAGCAGCAGCAGCAGTTTTTTGTCGTGTTGTTGTCAGGCAGATGAATGCGGGGCGGACTTGAGAACGGCCAGGAGCTACAACCGGCGCCACAAGGTGTGCGACCGACATGCTAAGGCTCCTGTCGTCTTAGTCTCCGGCAGTCGTCAGAGGTTTTGCCAGCAGTGTAGCAAGTTCCATGAGCTAGCACTGTTTGATGACACCAAGAGAAGCTGCAGGGAGAGATTAGCGAGTCATAATGAGCGTAGAAGAAAAGCCCATGCGAACCCCCACGATGCTGGGATGGAGTGGACAGCGGACAGCAGCCACCCAACAGGGCCATCTCAAGTGAGTGATGACTAG 444 0.5248 MDNEEEEEEENEEVRRKQKITIKVVSRRASSSSSSSSSSSFLSCCCQADECGADLRTARSYNRRHKVCDRHAKAPVVLVSGSRQRFCQQCSKFHELALFDDTKRSCRERLASHNERRRKAHANPHDAGMEWTADSSHPTGPSQVSDD* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0387 147 ProSiteProfiles Zinc finger SBP-type profile. 43 120 IPR004333 GO:0003677
Dod02g0387 147 MobiDBLite consensus disorder prediction 23 42 - -
Dod02g0387 147 Gene3D - 35 107 IPR036893 GO:0003677|GO:0005634
Dod02g0387 147 MobiDBLite consensus disorder prediction 24 42 - -
Dod02g0387 147 MobiDBLite consensus disorder prediction 112 147 - -
Dod02g0387 147 PANTHER - 2 126 - -
Dod02g0387 147 Pfam SBP domain 46 119 IPR004333 GO:0003677
Dod02g0387 147 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 126 IPR044817 GO:0003677
Dod02g0387 147 SUPERFAMILY SBT domain 44 123 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0387 Dod-Chr2 5184286 5185269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0387 46 120 SBP-box Gene Family AT1G53160 65.333 3.69e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod02g0387 SBP 8.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0387 - - vra:106776693 145.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0387 02 5184286 5185269 Dod02g0387 02 5184286 5185269 ECH