Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0379 ATGGGAGGTGACGGTGCCGTTGAGGAGTCGAAGGCATCCTCTGCTGCCACCGACGGCGGAGAAGGAGGAGGAGCTGGAGTAGGAGGAGTGAACATCAACATTCGGTGCTCCAACGGCTCCAAGTTTTCCGTTGAGATTGGGCTCGATTCCACCGTGGGGTCATTCAAGGAGGTCGTCGCTCGCAGCTGCGACATCCCCGCCGATCAACAGCGCCTGATTTACAAAGGCCGCATCCTCAAGGATGATCAAACTCTCCAAAGCTACGGTTTGGAGGCAGATCACACTGTTCATTTGGTTCGTGGCTTTGCGCCTTCTAGTACAGGTGATGGGACCAACAATACTACTGGTGCTAACAGCACAACAACTAATACAAGAGGTGCTGGTGCTAATGAGGGTGGGGGTTTAGGAGGGCCTGGTTTGGGAGCTTCACTCTTCCCTGGACTAGGTGCCAATGGGATGGGGGGCAGTGGCCTCAATAGCTTGTTTGGTGGCTTTCCAGATCTTGAACAAATGCAGCAACCATTTTTGTCGAATCCCAATATAGTGAGGGAAATAATGAACACACCTGCTATGCAAAATTTAATTAATAATCCTGAGATAGTGAGGAATCTTATAATGAATAACCCCCAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATTCTTAATGATCCCAGCACTCTCCGCCAGACACTGGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCCTCTCCTGAGGGATTTAACATGCTGAGGCGTATGTATGAAAATGTTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAATACAGGAAATGACCAAGCCAGGAACCAATCAACTAATCCCTCAACTGCTAGTTCTGAGGCAACTTCCCCTGTGCCCAACACTAACCCACTTCCTAATCCTTGGTCCTCCACTGGAACTGGAGGTGCTCAAAATAACACAAGAAGGTCAACCACTGGTGGGGATGCTCGACAGCAGACACCCACTGGCTTAGGAGGTCTTGGCTTGCCGGATCTTGAAGGCATGATGGGCGGTATGCCAGATGCCGCATTACTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGTGTCAATAATGAGCAGCGTGGCATGCCTGATTTAAATTCTCTTAGAGAAGTGATGCAAAACCCAGAGTTTCTTCGCCTATTTTCCTCACCTGAGACACTGCAGCAACTCATGTCTTTTCAGCAAGCTCTTTTGTCTCAGCTTGGTCAGCAACAATCAACACAGGAACCGGGTCAAACAGGTGGAGGCACTGGATCATTGAACAACATGGGGCTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAACAGATCAAATGAACCACCAGAGCAATTGTATGCTACCCAGCTTTCACAGCTTCAGGAGATGGGGTTCTTCGACACGCAAGAAAATATAAGGGCTCTTATTGCGACAGCAGGGAATGTTCATGCAGCCGTTGAGCGGCTTTTGGGGAACTCCGGACAGTAG 1629 0.485 MGGDGAVEESKASSAATDGGEGGGAGVGGVNINIRCSNGSKFSVEIGLDSTVGSFKEVVARSCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSSTGDGTNNTTGANSTTTNTRGAGANEGGGLGGPGLGASLFPGLGANGMGGSGLNSLFGGFPDLEQMQQPFLSNPNIVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDQARNQSTNPSTASSEATSPVPNTNPLPNPWSSTGTGGAQNNTRRSTTGGDARQQTPTGLGGLGLPDLEGMMGGMPDAALLTQLMQNPAISQMMQSILSNPQTMNQILGVNNEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLMSFQQALLSQLGQQQSTQEPGQTGGGTGSLNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATAGNVHAAVERLLGNSGQ* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0379 542 SUPERFAMILY UBA-like 496 538 IPR009060 GO:0005515
Dod02g0379 542 SMART ubq_7 30 101 IPR000626 GO:0005515
Dod02g0379 542 SMART CBM 208 247 IPR006636 -
Dod02g0379 542 SMART CBM 155 195 IPR006636 -
Dod02g0379 542 SMART CBM 401 436 IPR006636 -
Dod02g0379 542 SMART CBM 347 398 IPR006636 -
Dod02g0379 542 MobiDBLite consensus disorder prediction 283 356 - -
Dod02g0379 542 SUPERFAMILY Ubiquitin-like 27 118 IPR029071 -
Dod02g0379 542 SMART uba_6 500 538 IPR015940 -
Dod02g0379 542 MobiDBLite consensus disorder prediction 103 134 - -
Dod02g0379 542 Gene3D - 203 261 - -
Dod02g0379 542 Pfam Ubiquitin family 32 99 IPR000626 GO:0005515
Dod02g0379 542 PANTHER UBIQUILIN 13 542 - -
Dod02g0379 542 MobiDBLite consensus disorder prediction 1 24 - -
Dod02g0379 542 Pfam UBA/TS-N domain 500 536 IPR015940 -
Dod02g0379 542 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 13 542 - -
Dod02g0379 542 MobiDBLite consensus disorder prediction 283 346 - -
Dod02g0379 542 MobiDBLite consensus disorder prediction 105 128 - -
Dod02g0379 542 CDD UBA_PLICs 500 538 - -
Dod02g0379 542 ProSiteProfiles Ubiquitin domain profile. 30 99 IPR000626 GO:0005515
Dod02g0379 542 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 494 539 IPR015940 -
Dod02g0379 542 MobiDBLite consensus disorder prediction 447 468 - -
Dod02g0379 542 Gene3D - 482 542 - -
Dod02g0379 542 Gene3D - 28 113 - -
Dod02g0379 542 CDD Ubl_Dsk2p_like 31 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0379 Dod-Chr2 5097577 5101693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0379 30 99 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 5.61e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0379 K04523 - gmx:100797539 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0379 02 5097577 5101693 Dod02g0379 02 5097577 5101693 ECH
Dod02g0379 02 5097577 5101693 Dod05g0106 05 1509347 1514753 PCT