Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0350 ATGGACTTGGCTGTGTCTAGTTTTGTCCCTTCACTCCCTCACTCCACTTGCCCTCAGGAGGGGCCAACTCTCTCCATCACTCACTCTCTATCTCCCTCACGAACAATTCATCAAACACTTTTCTTTTCCTCTTCTCAACATGACACGCACGACAAGAATCCTCCAATACACGACGGAGAAGGCCACCGCGGTAGCCGCGCCGCCGCCAGAGGCGGTGGCTCTGGAGTCCGACTTCGTGGTCATCCTAGGCGGCTTTACTCTGCGCTCTCATATGCGTGGTCGGCCTCGTCGCCGTTGCGAGGTGCGCGTGGCTCCGGCGAGGCCCCGGCGGCGGCGGCGGAGCCTCGCCGCATCGGGTCCCTGGCGAACAAGGGCTTGAAGAAGAAGGTTCTTCAGTCGCTGCCGAGATTCTCCTACGTGGAAGGCGGAAACCCTGGCGGCGGCGGCGCGTGGGTGGCGACGGCGGAGTGCGCGATCTGCTTGTCGGAGTTCGCCCCCGGCGACGAGATCCGTGTGCTGCCGCAGTGCGGTCACGGGTTCCACGTGGCGTGTATAGACACGTGGCTGGGGTCGCACTCCTCGTGCCCGTCGTGCCGACAGGTGCTGGCGGTGGCGAGGTGCCAGAAGTGCGGGCGGTACCCAGCGGCCGGAGGAGGAGGCTCCGCCGCCAGAGTGGCGGTTAGTGAACCGGAGCTGAAGTCAAGGGAAGACGACAATGCCGTTTCGAATAGTAGTAACAATAACAATAATAATTGCGGTGGTGAGAGTAGCAGCGGTGGCGGCAGTAACATGGGACATAACGACAACAGTGGCTTCTTGCCTTGA 825 0.6145 MDLAVSSFVPSLPHSTCPQEGPTLSITHSLSPSRTIHQTLFFSSSQHDTHDKNPPIHDGEGHRGSRAAARGGGSGVRLRGHPRRLYSALSYAWSASSPLRGARGSGEAPAAAAEPRRIGSLANKGLKKKVLQSLPRFSYVEGGNPGGGGAWVATAECAICLSEFAPGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQVLAVARCQKCGRYPAAGGGGSAARVAVSEPELKSREDDNAVSNSSNNNNNNCGGESSSGGGSNMGHNDNSGFLP* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0350 274 MobiDBLite consensus disorder prediction 50 65 - -
Dod02g0350 274 CDD RING-H2_PA-TM-RING 156 199 - -
Dod02g0350 274 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 111 243 - -
Dod02g0350 274 SMART FANCL_C_2 153 207 - -
Dod02g0350 274 MobiDBLite consensus disorder prediction 9 24 - -
Dod02g0350 274 MobiDBLite consensus disorder prediction 226 274 - -
Dod02g0350 274 Pfam Ring finger domain 156 199 IPR001841 -
Dod02g0350 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 204 IPR013083 -
Dod02g0350 274 MobiDBLite consensus disorder prediction 1 24 - -
Dod02g0350 274 MobiDBLite consensus disorder prediction 43 79 - -
Dod02g0350 274 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 111 243 - -
Dod02g0350 274 SMART ring_2 157 198 IPR001841 -
Dod02g0350 274 SUPERFAMILY RING/U-box 156 204 - -
Dod02g0350 274 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Dod02g0350 274 MobiDBLite consensus disorder prediction 239 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0350 Dod-Chr2 4783482 4784590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0350 122 238 C3H Transcription Factor Family AT1G20823 61.538 2.77e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0350 - - adu:107487390 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0350 02 4783482 4784590 Dod05g0087 05 1193743 1195090 PCT