Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0252 ATGGAAACCAACGAGGTACTCGAAGAGCTTCTCAGCGTCGAGGTTGAGATTCAAGATGTCCAAGACCAAATAAGAGCGTTAGTTGAAAGGCAAGATAAGTTGTATGAGAGAAAATCTGAGCTGAGTGCTATTCTAGAAGCGTGTAAAGAATCTGGGAACCAGGTCAATAATGGGGCTCCAAGTGCTGTGGAGAATTGGTCTGGTGAATTTGAATGGGATTCACAAGCAGATGATGTTAGGTTGAATACTTTTGGCATTTCCTCTTACCGTGCACATCAAAGAGAGATAATTAATGCCATCATGAGTGGAAGAGATGTTCTGGTCATTATGGCTGCAGGTGGTGGCAAGAGCCTTTGCTACCAGCTTCCAGCTGTTCTTCGCGATGGAATTGCTCTTGTTGTCAGTCCTTTGCTTTCCTTAATTCAAGACCAGGTAATGGGTTTGACTGCTTTGGGCATTCCAGCATATATGTTGACTTCAACAACAAGCAAGGAAGATGAGAAGTTCATATATAAGGCACTGGAGAAGGGTGAGGGGGAACTCAAAATATTGTATGTCACTCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGGCATGACTTTCGACCTGACTACAAAAACCTCGGTATTCTCAAGACTCAGTTCCCTAATGTCCCTATGGTTGCTTTGACAGCAACTGCTACTCAAAGGGTCCAAAATGATCTTATGGAGATGTTGCATATTCCAAGATGTGTCAAATTTGTCAGCACGGTGAATAGGCCAAATTTATTTTATATGGTGAAGGAAAAATCATCCATTGGAAAGGTGGTTATTGACGAAATTGCTGAATTCATTCAAGAATCTTATCCAAATAAGGAATCAGGGATTGTTTATTGCTTCTCTAGAAAGGAATGTGAACAGGTTGCAAAGGAGTTACGAGAGAGAGGAATTTCAGCCGATTATTATCACGCAGATATGGATGTAAATGCTCGGGAAAAAGTTCATATGCGGTGGAGCAGTAGCAAGCTTCAGGTCATAGTTGGTACGGTAGCATTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTATCAGGAAAGTGGTCGAGCTGGCCGAGATGGACTTCCTTCTGAATGCCTACTATACTTCAGACCTGGTGATGTTCCCCGACAGAGTTCAATGGTCTTCTACGAAAATTCAGGACTGCAGAACCTGTATGACATTGTACGATATTGTCAGTCCAAACAACAATGCAGACGAAGTGCCTTTTTCCGGCATTTTGCTGAACCTCTACAAGAGTGCAATGGGATGTGTGACAACTGTGCATTCTCCAGTGAGGTGAAGGAAGTGGATGTCTCTGGCCACGCAAAACTAATGGTTTCATTGTTGCAAGATATGCGAGCAAATGATCAGAGGACAACAATGTTGCAGTTAGTTGATAAAATGAAAATAAAGCAGAAGGATCCAGGTTCTGAATTGAAAAAGGAGGAAATTGAGCAGCTCATCTTAAAGCTTTTGCTGGAGCATGTTTTGAAAGAGGAATTTCAGCATACAGCTTATGCCACAAATGCTTACATTGCTCCAGGACCGCTGGCCAAGCATATATTGCAAGGGAAGAAGACTGTGAAGCTTGAGATTTATAGTGAACAGAGAACTAAGGCTGGTGTAAGATCAGCAAAACGCAACCTTGGGTCCTCTGGTTTGGAGCTAAAGCTTGATGAACTGAGGAAAGAATTGTCTTCCATTCATGGAGGAATACTCCCACACTCTGTGTTGTCCACTCAACAAATCAGCTTGTTAAGTTCTCAAAAACCAAACTCACTAGAACGGCTGGAGAAGGTAATTGGAAAACTGAAGACCAAAAAGTATGGAAGTAGAATTCTTGAGGAAATTGAAAAATATTCTGCTTTCAAGCCGTCTGATGAAGAACAAGGAACTGATGCTAGACCTGCTAAGAGGTCAAGGACCAAGAAAAACCTTGTTTTTATTGAGAGTAGTGAAGATGAGGCATGA 2112 0.4181 METNEVLEELLSVEVEIQDVQDQIRALVERQDKLYERKSELSAILEACKESGNQVNNGAPSAVENWSGEFEWDSQADDVRLNTFGISSYRAHQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKEDEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLMEMLHIPRCVKFVSTVNRPNLFYMVKEKSSIGKVVIDEIAEFIQESYPNKESGIVYCFSRKECEQVAKELRERGISADYYHADMDVNAREKVHMRWSSSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKQQCRRSAFFRHFAEPLQECNGMCDNCAFSSEVKEVDVSGHAKLMVSLLQDMRANDQRTTMLQLVDKMKIKQKDPGSELKKEEIEQLILKLLLEHVLKEEFQHTAYATNAYIAPGPLAKHILQGKKTVKLEIYSEQRTKAGVRSAKRNLGSSGLELKLDELRKELSSIHGGILPHSVLSTQQISLLSSQKPNSLERLEKVIGKLKTKKYGSRILEEIEKYSAFKPSDEEQGTDARPAKRSRTKKNLVFIESSEDEA* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0252 703 ProSiteProfiles HRDC domain profile. 595 674 IPR002121 GO:0003676
Dod02g0252 703 SMART ultradead3 85 288 IPR014001 -
Dod02g0252 703 Gene3D - 280 476 IPR027417 -
Dod02g0252 703 Gene3D HRDC domain 599 667 IPR044876 -
Dod02g0252 703 Pfam Helicase conserved C-terminal domain 302 406 IPR001650 -
Dod02g0252 703 CDD SF2_C_RecQ 280 416 - -
Dod02g0252 703 Pfam HRDC domain 604 664 IPR002121 GO:0003676
Dod02g0252 703 PANTHER ATP-DEPENDENT DNA HELICASE Q1 8 677 - -
Dod02g0252 703 Gene3D - 480 580 IPR036388 -
Dod02g0252 703 SMART helicmild6 326 407 IPR001650 -
Dod02g0252 703 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Dod02g0252 703 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Dod02g0252 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
Dod02g0252 703 MobiDBLite consensus disorder prediction 671 703 - -
Dod02g0252 703 Pfam RecQ zinc-binding 419 475 IPR032284 -
Dod02g0252 703 Coils Coil 10 37 - -
Dod02g0252 703 Gene3D - 47 279 IPR027417 -
Dod02g0252 703 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Dod02g0252 703 PANTHER DNA HELICASE RECQ FAMILY MEMBER 8 677 - -
Dod02g0252 703 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 82 506 IPR004589 GO:0004386|GO:0006310
Dod02g0252 703 CDD DEXHc_RecQ1 71 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0252 Dod-Chr2 3369451 3378928 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0252 315 421 Eukaryotic Initiation Factors Gene Family AT3G19760 21.495 1.94e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0252 K10899 - gmx:100817635 1176.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0252 02 3369451 3378928 Dod02g0252 02 3369451 3378928 ECH