Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0245 ATGGGTTACGATTCCGATAGCCCCTCGCAAGATGGAAGAGATGAAGATGATGATGAAGAGTATGAGGAGTCTGGCAAGGGTAATCGTTTCCTTGGCTTCATGTTCGGAAATGTTGATAATTCCGGTGATCTTGATGTTGATTACCTTGATGAGGATGCAAAGGAGCATCTTTCTGCATTGGCTGACAAGCTGGGTACATCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACGACACCTGATGTTGTTGAACAAGACTGTGCTGAAAAAGCTGAAGATGCAGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGACTGAAGCTGCCAATGAAGAGGACTATTTATTACCGAAAAAGGAATTTTTCTCTTCTGAAGCCTCTCTTACAGCTCTGGAGTCCAGAGCTTCTGTCTTTGATGATGAAAATTATGACGAAGAATCTGACAACGAACAAGACTTAGTTAATAATGATTCTAAAGATACCGTCTCATTGACCGGGGACCAGGAAGAGAGTTTTGTAGATGCATCTAAGGAAGAGAGTGCCCTGGAACGTCATGTACAGATTGGCTTGCAGCAGGCTGAAGAATTGGATACTGATGTACAAAAAGTTGACGAGGAAGGGCCTGAGGTTCTGAAAAGGCCTACACCATTACCAGTTTTGTGTGTGGAAGATGGGATGGAAATTTTACGCTTCTCTGAAATCTTTGGTATTCATGAACCTCTGAGGAAAGCAGAAAAGAGAGAGCATCGGCATTCTGTTACTAGAGATAGATACAAATCTTTGGATTTTTCTGATGATATTGTAGAAGAGGATGAAGAGGCATTCCTCAAGGGATTCTCTCGGAGTCTCTCACTTTCTAAACAGGCTTATGTACTCCGTAATGATGCATCAGAAAGTAATGATGCTGACTTGGAATTTCCAAAATTTGGATTTCTTCATGGGGATGCCTCAATGACCGTGAAAGATGATCGGCAACAAAAGGACTATTTTCTTAGTGCTGAACCAATGAAAGGGGATTTCACTGATGATCTTTCCTGGAAAGATGCTTCTCTTGTGTCAGCCAACTTTTACCCTCTTGATCAGCAAGACTGGGAAAATGAAATCCTTTGGGGCAATTCTCCTGCTGCAAGTGACAATAATGTTGAGAGCTGTGAAATTTCCGGACCTGAGTTGGGAGCTTCTGGTGGCAGTGAAATAGAAATTGAAAGTGGGATAGAAAAACTTAAGTTGGAGCCCCAGAAAATAATGGAGGAGAAAGATCATAATGTTTTCATGTGCAGCTCCCCTGTATCATTGGAGCCCTTTGGCTCAAGGGATTCGTCTGATGCTAAAACTGACTTATTGTCAAGAAGTCTATTTCATCCCCAACTTTTGAGGCTAGAGTCGAGATCTGAAGTGGATAGCTCTAGTGTTGCCAATGGAAGACGGGGGAATATATCTGAAAATCATAATCAAGGTGGCCAAATAAAGCGTTTTACCAAGGTCATGTCACAAAACAGAGACCTGATGGAGGGGTCTTGGGTTGACAAGATATTATGGGAGGAGTTTGATAGACCTGCTGTGAAACCAAAGCTTATCTTTGATCTTGAGGATGATCAAATGCACTTTGAAGTTTTGGATAACAAGGACGGTAGCCATCTTCGCCTTCATGCAGGGGCTATGATTTTAACTCGTTCCCTAAAAGCATGTGTTGGGGACTCTTCTGAGCAAATTGGACATGGAGTTCAATATGGATGGCGATATGTTGCTAACGATAAACACTATTCTAACAGGAAAACGTCTCAGCAACTGAAATCAAATTCTAAAAAACGCTCGGCTCATGGTGTTAAAGTTTTCCACTCTCAACCTGCACTGAAGCTGCAGACAATGAAGTTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCTAAAGCATTATGGTATCCCCATGATAATGAGGTTGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAAATTATTATCAAGAGCTTGGGTGGCAAAGGGAGTAGACTGCATGTTGATGCTGAAGAAACTCTTGCTTCTGTTGTAGCAAAAGCTTCTAAAAAGCTAGATTTGAAGGCATCAGAAACCGTGAAAATATTTTATTTAGGGAGGGAGCTTGAAGATAACAAATCACTTGCTGCACAAAATGTTCAACCAAATTCATTGTTACATCTTGTACGTACAAAGATACACTTGTGGCCAAGGGCACAAAGGGTTCCTGGTGAGAACAAATCATTGCGTCCTCCAGGGGCATTCAAGAAAAAGTCTGATCTGTCTGTGAAAGATGGACATGTTTTTCTGATGGAGTATTGTGAGGAAAGACCTTTACTTTTGAGCAATGTTGGAATGGGTGCAAGACTTTGCACGTACTACCAAAAATCTTCTCCAGATGATCAATCTGGCTCTTTATTACGTAACACGGATGGTAGCTTGGGGCACATTATATCTCTGGATCCTGCCGATAAATCTCCATTCATCGGGGAATTAAAACCTGGTTGCAGTCAGTCCTCACTTGAGACAAATATGTATAGAGCACCCATATTTCCTCATAAAGTTCCATTAACTGACTACCTACTGGTTCGTTCACCCAAGGGAAAGCTATCATTAAGGCGCATTGATAAAATCAATGTTGTTGGTCAGCAGGAGCCTCTCCTGGAGGTATTATCCCCTGGAAGTAAGAATCTTCAGACTTACATGATGAACAGGCTGCTGGTACACATGTGCCGTGAATTCCAAGCAGCAGAGAAGCGACACATGCCCCCATACATCCGTATTGATGAGTTTCTGTCACAATTTCCTTACCTATCAGAAGCCTCACTCCGTAAAAGAATTAAGGAATATGCCAATTTACAGAGGGGAACAAATGGACAGTCAATTTTGGTTAAAAAGCGAAATTTTCGCATGTGGTCTGAGGAGGAGTTGAGAAAAATGGTGACCCCAGAACTTGTTTGTGCCTATGAAAGCATGCAAGCTGGCCTCTACCGTCTAAAACATTTAGGAATAACTGAAACACATCCTGCTAACATTTCATCTGCAATGAGTCGGCTTCCTGATGAAGCAATAGCACTGGCTGCTGCATCACACATTGAGAGGGAACTGCAAATTACTCCTTGGAACTTAAGTAGCAACTTTGTTGCCTGTACAAGCCAGGGTAAAGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCATCTGGCCGTGGCTTGGGTTTTAGCTATGCTCGAGCACCTCCAAAGGCTCCTGTGTCAAGTGCAGTGGTGAAGAAAAAAGCTGCTGCTGGCCGTGGTGGTTCCACTGTTACTGGCACAGATGCTGATCTTCGTAGATTAAGCATGGAGGCTGCACGAGAGGTGCTTCTTAAATTCAATGTTCCTGAGGAAGTCATTGCTAAACAAACCAGGTGGCATCGCATTGCTATGATACGCAAGCTTTCAAGTGAGCAAGCTGCAGCTGGGGTTAAGGTTGATCCAACAACTATCAGCAAATATGCTCGTGGCCAACGAATGTCCTTTCTACAATTACAGCAGCAGACGAGAGAAAAGTGCCAAGAGATTTGGGATCGACAAGTTCAGAGTCTTTCAGCTGTAAACGGTGATGAAAATGAGTGTGATTCAGAAGCGAATAGTGATCTAGATTCTTTTGCTGGAGATCTGGAAAATTTACTTGATGCTGAGGAGTGTGAAGAGGGAGAAGAGGGTACCAATGACTTAAAACGTGATAAGGGAGATGGTGTTAAGGGTCTTAAAATGAGAAGACATCCAACTTTGGCCCAAGCAGAGGAGGAAATAGAAGATGAAGCAGCTGAGGCTGCTGAATTGTGCAGGTTGCTTTTGGATGATGATGAAACTGTTGGAAAGAAAAAGAAGAAAGCTAGACTTGTGCTGGAAGAAGCCAGATTGGTACCGAAGCCGCCACCAAAATTCATAATCTATGACAATACTGAACAAGTTAAGCAAGTAACAACTACCTTGCAAGTAGATGGTACTAATCATTTGAAAGAGGATACAATTACTGATCCCAGGGAGGAGGACAATTTTAACACTAAAAAGGTGAAATCAGTGAAGGTCACTAAAGCAAAGAAGAATGAGATTCCACCTATTAGTGTACCCAATAAAAAAATCAGATTAAATATGGGAGAAGGGATCAAGAATCAGGTATTCAAGGAGAAAAAACCATCGAGGGAAACTTTTGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGAGAACGAACAAGAACTGTCCAAAATATGGGGAAGATCTAGAAGCACAGATTGAATCAATAGATATTGAAAAATCATCTGGAAAATCCAGCCTTTTGGATCCCTCTACTCAGTCCCAGCATAAAGCCCTCCTGAAAAAGTCATTGTCAAAAAACACATCAAAAACTGCTCCAGTTGACAATTCAACAAAAATTCCACTGAAGTTCGTATGCAGCTCCACTGAGAAATCTTCTGATAAACCTGCTATAGAAACCCTGCAGAGTACTGACAAGCCTGTCACTTCTGATTCTGAAACAGCTAAGTCTGCTAAGGTTAATAAAATAATTATTCCCAAAGTGAAACCGGACGATACGCAGGCTGAATCTCATAGGCATGCTATTGTTATTCGGCCTCCTACTGATTCAGGTAAAGGTCGGGTTGTCTCTCATAAGCTCCCAATTACAATACGGCGGCCTGTAGAAATAGAAAGGGAGCAACATCACAAGAAGATTGTTATAAAACACACAAAGGAGGTCATTGATCTGGACTTGGACAGTCCTGTTGGGAAGACAGGACTTGAGCACAGAAAAACTAAAAGAATTGTTGAATTGTCAAATTTTGAGAAGCAAAGAAAGCAGGAGAAGTCCATGCATTCAACTGAAGGTTTGGTAAAATGGAAAGCTAAAGAGGATAGAAGATGGCGGGAAGATCAAGAGAAACGGAGAAATGAAGCAAGACTCAGAGAAGACAGGGCAAGGAGGCATCACAAAGAAGAAATCAGGATGCTCAAAGAGCAAGAAAGGTTAGACGAGATAAAAAGATACGAAGAAGATATTAGAAGAGAGAGGGAGGAGGAAGAACAGCAAAAGGCAAAGAAGAAAAAGAAGAAGAAAAAGCCTGATTTCACAGATGAGTATTTGGATGACTCCAGAACGAGGAGATATGATAAGAGGATACTGGAAAAAGAGCGAAGTGGAAAAAGGAGATCCGTTGTAGAGTTAGGAAAGTGTGGTGCAGATTATATGCCGCCAACAAAACGACGAAGAGGGGGAGGAGGAGAGGTTGGTTTAGCAAATATTTTGGAGAGCATTGTAGACACCATTGTGAAAGATAGGTATGATCTGTCCTATCTTTTCTTGAAGCCGGTGTCTAAGAAAGAGGCTCCTGACTACCTGGACATTATAGAGAGGCCTATGGATTTTTCTAGAATCAGGGAGAGGGTACGGAATATGGAGTACAAGAGCAGAGAAGATTTCAGACATGATGTCTGGCAGATAACTTATAATGCTCATAAATATAACGATGGCCGGAATCCAGGAATTCCTCCCCTTGCAGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGATGATAACCTCACTTCAGCTGAAGCAGGTATTGAAATTAGAGATTTTTGA 5670 0.4175 MGYDSDSPSQDGRDEDDDEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGTSLTDIDLSGKSPQTTPDVVEQDCAEKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKEFFSSEASLTALESRASVFDDENYDEESDNEQDLVNNDSKDTVSLTGDQEESFVDASKEESALERHVQIGLQQAEELDTDVQKVDEEGPEVLKRPTPLPVLCVEDGMEILRFSEIFGIHEPLRKAEKREHRHSVTRDRYKSLDFSDDIVEEDEEAFLKGFSRSLSLSKQAYVLRNDASESNDADLEFPKFGFLHGDASMTVKDDRQQKDYFLSAEPMKGDFTDDLSWKDASLVSANFYPLDQQDWENEILWGNSPAASDNNVESCEISGPELGASGGSEIEIESGIEKLKLEPQKIMEEKDHNVFMCSSPVSLEPFGSRDSSDAKTDLLSRSLFHPQLLRLESRSEVDSSSVANGRRGNISENHNQGGQIKRFTKVMSQNRDLMEGSWVDKILWEEFDRPAVKPKLIFDLEDDQMHFEVLDNKDGSHLRLHAGAMILTRSLKACVGDSSEQIGHGVQYGWRYVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIIKSLGGKGSRLHVDAEETLASVVAKASKKLDLKASETVKIFYLGRELEDNKSLAAQNVQPNSLLHLVRTKIHLWPRAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKSSPDDQSGSLLRNTDGSLGHIISLDPADKSPFIGELKPGCSQSSLETNMYRAPIFPHKVPLTDYLLVRSPKGKLSLRRIDKINVVGQQEPLLEVLSPGSKNLQTYMMNRLLVHMCREFQAAEKRHMPPYIRIDEFLSQFPYLSEASLRKRIKEYANLQRGTNGQSILVKKRNFRMWSEEELRKMVTPELVCAYESMQAGLYRLKHLGITETHPANISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGLGFSYARAPPKAPVSSAVVKKKAAAGRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAAAGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENECDSEANSDLDSFAGDLENLLDAEECEEGEEGTNDLKRDKGDGVKGLKMRRHPTLAQAEEEIEDEAAEAAELCRLLLDDDETVGKKKKKARLVLEEARLVPKPPPKFIIYDNTEQVKQVTTTLQVDGTNHLKEDTITDPREEDNFNTKKVKSVKVTKAKKNEIPPISVPNKKIRLNMGEGIKNQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDLEAQIESIDIEKSSGKSSLLDPSTQSQHKALLKKSLSKNTSKTAPVDNSTKIPLKFVCSSTEKSSDKPAIETLQSTDKPVTSDSETAKSAKVNKIIIPKVKPDDTQAESHRHAIVIRPPTDSGKGRVVSHKLPITIRRPVEIEREQHHKKIVIKHTKEVIDLDLDSPVGKTGLEHRKTKRIVELSNFEKQRKQEKSMHSTEGLVKWKAKEDRRWREDQEKRRNEARLREDRARRHHKEEIRMLKEQERLDEIKRYEEDIRREREEEEQQKAKKKKKKKKPDFTDEYLDDSRTRRYDKRILEKERSGKRRSVVELGKCGADYMPPTKRRRGGGGEVGLANILESIVDTIVKDRYDLSYLFLKPVSKKEAPDYLDIIERPMDFSRIRERVRNMEYKSREDFRHDVWQITYNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDNLTSAEAGIEIRDF* 1890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0245 1889 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Dod02g0245 1889 MobiDBLite consensus disorder prediction 1499 1522 - -
Dod02g0245 1889 Pfam TATA box-binding protein binding 18 65 IPR009067 -
Dod02g0245 1889 SMART ubq_7 668 740 IPR000626 GO:0005515
Dod02g0245 1889 CDD Bromodomain 1774 1870 - -
Dod02g0245 1889 MobiDBLite consensus disorder prediction 1695 1719 - -
Dod02g0245 1889 Pfam Protein of unknown function (DUF3591) 588 1154 IPR022591 -
Dod02g0245 1889 MobiDBLite consensus disorder prediction 1246 1260 - -
Dod02g0245 1889 Gene3D - 650 740 - -
Dod02g0245 1889 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1397 1884 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Dod02g0245 1889 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 14 1297 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Dod02g0245 1889 MobiDBLite consensus disorder prediction 1241 1260 - -
Dod02g0245 1889 SUPERFAMILY Ubiquitin-like 638 738 IPR029071 -
Dod02g0245 1889 Coils Coil 1270 1290 - -
Dod02g0245 1889 Pfam Bromodomain 1776 1851 IPR001487 GO:0005515
Dod02g0245 1889 Coils Coil 1679 1713 - -
Dod02g0245 1889 Coils Coil 1649 1669 - -
Dod02g0245 1889 Pfam Ubiquitin family 670 740 IPR000626 GO:0005515
Dod02g0245 1889 MobiDBLite consensus disorder prediction 1447 1480 - -
Dod02g0245 1889 PANTHER BNAA01G26290D PROTEIN 1397 1884 - -
Dod02g0245 1889 PANTHER BNAA01G26290D PROTEIN 14 1297 - -
Dod02g0245 1889 ProSitePatterns Bromodomain signature. 1790 1847 IPR018359 -
Dod02g0245 1889 CDD Ubl_TAFs_like 668 739 - -
Dod02g0245 1889 SMART bromo_6 1764 1875 IPR001487 GO:0005515
Dod02g0245 1889 ProSiteProfiles Bromodomain profile. 1785 1855 IPR001487 GO:0005515
Dod02g0245 1889 MobiDBLite consensus disorder prediction 67 86 - -
Dod02g0245 1889 Gene3D - 1763 1887 IPR036427 GO:0005515
Dod02g0245 1889 Gene3D - 21 70 IPR036741 -
Dod02g0245 1889 ProSiteProfiles Ubiquitin domain profile. 668 738 IPR000626 GO:0005515
Dod02g0245 1889 SUPERFAMILY Bromodomain 1756 1877 IPR036427 GO:0005515
Dod02g0245 1889 PRINTS Bromodomain signature 1788 1801 IPR001487 GO:0005515
Dod02g0245 1889 PRINTS Bromodomain signature 1802 1818 IPR001487 GO:0005515
Dod02g0245 1889 PRINTS Bromodomain signature 1818 1836 IPR001487 GO:0005515
Dod02g0245 1889 PRINTS Bromodomain signature 1836 1855 IPR001487 GO:0005515
Dod02g0245 1889 MobiDBLite consensus disorder prediction 93 119 - -
Dod02g0245 1889 MobiDBLite consensus disorder prediction 70 84 - -
Dod02g0245 1889 MobiDBLite consensus disorder prediction 93 114 - -
Dod02g0245 1889 MobiDBLite consensus disorder prediction 1 29 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0245 668 738 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 5.42e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0245 K03125 - gmx:100780733 3028.42