Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0233 ATGGCTGTGAACTTGACGGAATCGGCGATAGCGATGATGTGCAGGGACGATTTCAGTTCGGAGGACCTGAATCCGGTTCTGCAAGTGATCGACGTGAAGCTGGTGCAGTCGCAGCAGCACTCCACCGAGAGGTACCGGCTGCTGCTCTCCGACGGGTCCCAGTTCCAGCAAGGGATGCTCACCACTCAGAAGAACGAATTGGTCACTTCCGGCAAGTTGCAGAAAGGTTCCATCATTAAGCTCACTCAGTTCATCTGCAACGTTATCCAGAACCGCAAGATTGTTATCATAATTGAGCTAGATGTGGTGCTTGAAAAATGTGAACTGATTGGAGATCCTGTCCCAGCAACAAGGAATACACCTGCACAATCTGCCACTGGTCAATTAGGAGTCACCTCGGTGAATCCACCGTCAAATTTGAATAGTAATTCTCATGCAGGTGGAATGGCTGCTGGGTCAAATGTGGCTGCGCCGTCTCCTGATCCTCCAAAAGTGAATTATCCTGCTAGAAGTGTTTATTCTAATGGTTCTGATTCGGTGAGATATGGTACATCAAATGCTCCTCCTAGTTATCCTAAAGTAGAGCGTACTTATCCTAAAGTAGAGCCTGGTGCTACTTTACCCAGATCATCATCATACAGTGGGTCTTTTGGTGATCAGAACACGAGCTTCCGCAATCCGCAATCCGAGGCTTCAAGGCCTTTTCAGAATTCTTATGCTCGTCCACCGCAGCCCATGTACCGACAGCCATCTCCAGTGTACAATAACAGAGGGCCTATGGCAAGAAATGAAGCTCCCCCCAGGGTAATTCCAATAGCCGCATTGAATCCATACCAGAGTATGTGGACGATTAAAGCTAGAGTAACAGCTAAGGGGGAACTCAGGCACTATAGCAATGCCCGAGGTGATGGCAAAGTATTTTCTTTTGACCTTCTAGATTCTGATGGTGGAGAAATTCGGGCAACTTGCTTTAATGCAGTGGCTGATCAGTTCTACAATGTAATTGAAGCTGGTAAAGTCTATCTGATTTCCAGGGGAAGTGTAAAGCCAGCACAAAAGAACTTCAATCACCTCCGCAATGATCAGGAGCTGACCCTTGATATTACCTCAGTTATACAGCCATGTGTTGATGATGATCAGTCAATTCCGAAGCAGACTTTTAACTTTCGCCCCATTAGTGAAGTTGAAAGTGTTGAAAACAACAGCATTTTAGATGTGATTGGTGTGGTGTCTTCTATTAGCCCTACAGCTTCAATCATGAGAAAAAATGGCACTGAAACTCAGAAGAGAACCCTCCAGTTGAAAGATATGTCTGGCCGAAGCATTGAGTTAACTTTATGGGGAAATTTTTGCAATGCAGAGGGACAGAGGCTACAAGGTATTTGTGATTCTGGGGCATTTCCAGTTTTGGTTGCCAAAGCTGTCAGAGTAAATGATTTCAATGGGAAGTCTGTTGGGACCATAGCCACTAGCCAGTTATTTGTAGAGCCTGATTTTCCAGAGGCTTATAAGCTGAAAGAATGGTTTGACAGGGAGGGGAGGAATGTTCCAACTATTTCTATATCCAGAGAAGCATCTAATTTTGGTAAGACTGATGTGCGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACATCTGAGAAGCCTGATTGGATATCTGTCTGTGCAAGTGTTTCATTCATTAAAGTTGATAACTTCTGCTACACAGCTTGCCCTATCATGATAGGGGACAGGCAATGCAACAAAAAAGTGACTAATAATGGAGATGGGAAATGGCGATGTGACAGGTGTGATCAATCTGTTGATGCTTGTGATTACAGGTACATACTGCAATTCCAGATTCAGGATCACACTGGCTTGACATGGGTTACTGCTTTCCAGGAGTCTGGTGAGGAGATCATGGGTATACCTGCTAAAGATCTGTATTATCTCAAATTTGAAGAACAAGATGATGAAAGATTTGCAGAAATCATCCGTAAAGTCCTCTTCACTAAATATATGTTCAAGTTAAAAGTGAAGGAAGAGACATTCAGTGATGAACAGCGTGTTAAGTCAACAGTAGTAAAAGCAGAGAAGGTTAACTTTGCATCCGAATCCAGATTTCTTTTGGATGTAATTGATAAGCTTAAGGCTGAGAAAGCAGAAGGTACCAATCCTACCTCTATAAATAATAATACTGGACTAGGGAGTGTTGGAACTGGACAAGCTATGCCGCCAGTTTATAATCCTCCTACAATGAGCAACACTAATGCTAGCAGAGATTATGGGATGCCTGCAAATCAAACGGGTCAGTATGGAAACCAATATAGCAGTTCTTATGCTTCAACAGGTGCTGCTAGTTCATATGTGTCTTGTAACATCTGTGGAGGCTCTGGTCACAGCTCTGCGCAATGCCCCAATAATATGATGAATCGACCTGGACAGCCAGCGGGAGGGGGCTTTGCAAGCAGGGTATCTGCTGGATCAGGAGTTTCCTCTGGTGAATGCTTCAAATGTCATCAAACTGGCCATTGGGCAAGAGACTGTCCTGGTCTCAGTGCAGCCCCTCCAGCTTATGGAAGCAATAATAATGTAATGCAAGGAAGATATGGGATCGCCCAGAAGCAACAATTTGGAGGATACTGA 2631 0.4428 MAVNLTESAIAMMCRDDFSSEDLNPVLQVIDVKLVQSQQHSTERYRLLLSDGSQFQQGMLTTQKNELVTSGKLQKGSIIKLTQFICNVIQNRKIVIIIELDVVLEKCELIGDPVPATRNTPAQSATGQLGVTSVNPPSNLNSNSHAGGMAAGSNVAAPSPDPPKVNYPARSVYSNGSDSVRYGTSNAPPSYPKVERTYPKVEPGATLPRSSSYSGSFGDQNTSFRNPQSEASRPFQNSYARPPQPMYRQPSPVYNNRGPMARNEAPPRVIPIAALNPYQSMWTIKARVTAKGELRHYSNARGDGKVFSFDLLDSDGGEIRATCFNAVADQFYNVIEAGKVYLISRGSVKPAQKNFNHLRNDQELTLDITSVIQPCVDDDQSIPKQTFNFRPISEVESVENNSILDVIGVVSSISPTASIMRKNGTETQKRTLQLKDMSGRSIELTLWGNFCNAEGQRLQGICDSGAFPVLVAKAVRVNDFNGKSVGTIATSQLFVEPDFPEAYKLKEWFDREGRNVPTISISREASNFGKTDVRKTISQIKDEKLGTSEKPDWISVCASVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSVDACDYRYILQFQIQDHTGLTWVTAFQESGEEIMGIPAKDLYYLKFEEQDDERFAEIIRKVLFTKYMFKLKVKEETFSDEQRVKSTVVKAEKVNFASESRFLLDVIDKLKAEKAEGTNPTSINNNTGLGSVGTGQAMPPVYNPPTMSNTNASRDYGMPANQTGQYGNQYSSSYASTGAASSYVSCNICGGSGHSSAQCPNNMMNRPGQPAGGGFASRVSAGSGVSSGECFKCHQTGHWARDCPGLSAAPPAYGSNNNVMQGRYGIAQKQQFGGY* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0233 876 Pfam Replication factor-A C terminal domain 553 704 IPR013955 -
Dod02g0233 876 Gene3D - 520 711 IPR012340 -
Dod02g0233 876 Gene3D - 4 117 IPR012340 -
Dod02g0233 876 ProSiteProfiles Zinc finger CCHC-type profile. 831 845 IPR001878 GO:0003676|GO:0008270
Dod02g0233 876 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Dod02g0233 876 Gene3D - 381 519 IPR012340 -
Dod02g0233 876 SUPERFAMILY Nucleic acid-binding proteins 387 516 IPR012340 -
Dod02g0233 876 MobiDBLite consensus disorder prediction 716 739 - -
Dod02g0233 876 PANTHER REPLICATION FACTOR A 1, RFA1 3 748 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dod02g0233 876 Pfam Replication protein A OB domain 392 495 IPR031657 -
Dod02g0233 876 CDD RPA1_DBD_C 537 710 IPR013955 -
Dod02g0233 876 SUPERFAMILY Nucleic acid-binding proteins 534 711 IPR012340 -
Dod02g0233 876 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 243 710 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dod02g0233 876 Pfam OB-fold nucleic acid binding domain 282 371 IPR004365 GO:0003676
Dod02g0233 876 Gene3D - 268 378 IPR012340 -
Dod02g0233 876 Pfam Zinc knuckle 830 845 IPR001878 GO:0003676|GO:0008270
Dod02g0233 876 ProSiteProfiles Zinc finger CCHC-type profile. 787 802 IPR001878 GO:0003676|GO:0008270
Dod02g0233 876 MobiDBLite consensus disorder prediction 115 263 - -
Dod02g0233 876 SUPERFAMILY Retrovirus zinc finger-like domains 815 848 IPR036875 GO:0003676|GO:0008270
Dod02g0233 876 MobiDBLite consensus disorder prediction 207 244 - -
Dod02g0233 876 Gene3D - 783 850 - -
Dod02g0233 876 CDD RPA1_DBD_B 403 510 - -
Dod02g0233 876 SUPERFAMILY Nucleic acid-binding proteins 269 381 IPR012340 -
Dod02g0233 876 MobiDBLite consensus disorder prediction 117 149 - -
Dod02g0233 876 PANTHER REPLICATION PROTEIN A SUBUNIT 3 748 - -
Dod02g0233 876 MobiDBLite consensus disorder prediction 170 186 - -
Dod02g0233 876 CDD RPA1N 9 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Dod02g0233 876 SMART c2hcfinal6 786 802 IPR001878 GO:0003676|GO:0008270
Dod02g0233 876 SMART c2hcfinal6 830 846 IPR001878 GO:0003676|GO:0008270
Dod02g0233 876 CDD RPA1_DBD_A 271 374 - -
Dod02g0233 876 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Dod02g0233 876 MobiDBLite consensus disorder prediction 718 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0233 Dod-Chr2 3216462 3220018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0233 1 826 Core DNA Replication Machinery Family AT5G45400 53.767 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0233 K07466 - gmx:100778597 1247.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0233 02 3216462 3220018 Dod02g0233 02 3216462 3220018 ECH