LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod02g0204	ATGGGTCGGAAACACGACGCCGTTTTAGCAACTGAACCAGTCGCCGAAGCAGCACAAGAAGAAGCCCCTAACAGCCCCGAACTCAAATCCGAAAAGAGGAAGAAGAAGATAAAGAGCAAAGACAAACACAGGCAGAAAAACGAAACGACTAGTCCCAAAAGAAAGCACGACGAAGTCCACCCCCAAAACGACGCCGAATCAGACGAGAAGAAGAAAAAGAAGAAGAAGCACAAGCACAGGCCCGATTCGAAGGAGAAGGTGGACGAAACCAAACCCGAATCCGTCGACGGAGGTTGCGGCGATGAATCGGTTACCGACGGGCTCGTGGTGGTCTCCGGGAAGAACGCCGGCGACGCGAAGTACGGGCCCGTGAAGAGCTTCGCCGGTTCGGGTCTGCCGGAGAATGTTCTGGAGTGCTGCAAGGGTTTTGAGAGGCCTTCTCCGATTCAGTCGCGGGCGTGGCCGTTCTTGTTGGACGGTCGTGATCTCATCGGAATCGCAGCAACTGGATCTGGGAAGACGCTGGCGTTTGGGATTCCGGCGGTTATGCACGTTCTGGGGAAGCGGAAAAGCAAATCTTCCAAGGGTCGGAACCCTCTTTGCCTCGTGCTTTCTCCCACGAGGGAGCTTGCTCAACAAATATCAGATGTTATGTGTGATGCTGGTAGGTCTTGTGGTGTGGAATCAGTTTGCTTGTATGGTGGAACCTCCAAAGGACCACAAATCTCTTCACTGAAATCTGGCATTGACGTTGTCATTGGAACTCCTGGACGTATACAGGATCTGATCGAAATGGGTATCTGTTGCCTAAAAGAAGTATCTTTTGTGGTGCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAGTAGTCCGCTCTATACTGGGTCAGACATGTTCTGTTCGTCAAATGGTGATGTTCAGTGCTACATGGCCCTTACCAGTTCATCACTTAGCACAGGAGTTTATGGATCCTAGCCCTGTAAAAGTTGTTGTAGGTTCAGAAGATTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGATCGTGCACGTGATAAGCGACTGGTTGCTTTACTGGAAAAGTACCATAAATCTCAAAGGAACCGGGTGCTGGTTTTTGTTTTGTACAAAGCAGAAACCACACGAGTTGAAAGGATGCTTCAAGAAGAAGGTTGGAAGGTTGTGTCAATACATGGGGACAAAGCACAACATGATCGTACAAAGGCACTGTCATTGTTCAAGCAGGGGAGCTGTCCTTTGATGATTGCTACTGATGTGGCTGCTCGAGGATTGGATATTCCAGATGTTGAAGTGGTGATCAACTATAGTTTTCCTCTTACTACAGAAGATTATGTTCATAGAATTGGGCGTACTGGACGAGCTGGAAAGAAAGGGGTTGCCCACACATTCTTCACACAGCAGAATAAGGGTCTTGCTGGTGAGCTTGTTAATGTTTTAAGAGAAGCACGGCAAATTGTGCCAGATGCCCTTTTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCGAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTCAAAAAATAACATTTGACAACTCTGACAATGAAGACTAA	1635	0.4765	MGRKHDAVLATEPVAEAAQEEAPNSPELKSEKRKKKIKSKDKHRQKNETTSPKRKHDEVHPQNDAESDEKKKKKKKHKHRPDSKEKVDETKPESVDGGCGDESVTDGLVVVSGKNAGDAKYGPVKSFAGSGLPENVLECCKGFERPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLGKRKSKSSKGRNPLCLVLSPTRELAQQISDVMCDAGRSCGVESVCLYGGTSKGPQISSLKSGIDVVIGTPGRIQDLIEMGICCLKEVSFVVLDEADRMLDMGFEQVVRSILGQTCSVRQMVMFSATWPLPVHHLAQEFMDPSPVKVVVGSEDLAANHDVMQIVEVLDDRARDKRLVALLEKYHKSQRNRVLVFVLYKAETTRVERMLQEEGWKVVSIHGDKAQHDRTKALSLFKQGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREARQIVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKITFDNSDNED*	545

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod02g0204	544	MobiDBLite	consensus disorder prediction	1	104	-	-
	Dod02g0204	544	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	154	331	IPR014001	-
	Dod02g0204	544	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	277	285	IPR000629	-
	Dod02g0204	544	Gene3D	-	29	335	IPR027417	-
	Dod02g0204	544	Pfam	DEAD/DEAH box helicase	148	315	IPR011545	GO:0003676\|GO:0005524
	Dod02g0204	544	CDD	DEADc	141	332	-	-
	Dod02g0204	544	MobiDBLite	consensus disorder prediction	43	71	-	-
	Dod02g0204	544	PANTHER	BNAA08G07020D PROTEIN	25	530	-	-
	Dod02g0204	544	SMART	helicmild6	387	468	IPR001650	-
	Dod02g0204	544	Pfam	Helicase conserved C-terminal domain	359	468	IPR001650	-
	Dod02g0204	544	CDD	SF2_C_DEAD	345	477	-	-
	Dod02g0204	544	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	25	530	-	-
	Dod02g0204	544	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	198	481	IPR027417	-
	Dod02g0204	544	SMART	ultradead3	142	348	IPR014001	-
	Dod02g0204	544	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	125	151	IPR014014	GO:0003724
	Dod02g0204	544	Gene3D	-	336	510	IPR027417	-
	Dod02g0204	544	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	360	507	IPR001650	-
	Dod02g0204	544	MobiDBLite	consensus disorder prediction	82	96	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod02g0204	Dod-Chr2	2784774	2789150	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod02g0204	123	497	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.361	4.43e-56	192

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod02g0204	K14811		-	gmx:100806057	865.529