Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0156 ATGTCAACGAGAAAGACGAGAGGGAGAGACCACCGCGCACCTCAGAAGGACAAGGACAAGGACAAGGACGACGAGTCCTTCACCGTAAAGCCTCTCCATCAGCAACCACCGCCACCGTCCACTTCTCGAAACCACCACCACCACCGCACACCAAGGTCGACCAACACCCGCGCCGCCCAACATCATCAACAACAAACCAAATTCCGCTTCGTCAAGAAGTCTGAGCTCCCTCCCTCTTCTCCTTCTTCTGATTCCATTATTTCCAACTCCGATTCCATGGCGGCGGCTGGTTCTGCTGATCATGCCACACCGCCACCGCCGCCGCCACATGAGAATCACCGCCAAGAAGAACAGAACGACCACGCTGTTTGTGATGCTGTAAAAGTGACAGATCACGGGGATAGTTCGAGCAAGATCAAGGAAGAAGAAGAGGATGGTGATGATGTTGTGGTTAGGCTTGACAGGTTGCTCAGTGGTTTGGAAGAGCCTGAGTTGTCTGAGGAGAAGCTCAGAATCAATGACCAATTGCAGCAAGATGAGTTACTTGTGGTGGAGTCAATTTATGGAGAAAATGTTCTCAAGCTTGACACTTGCAAAGGCCTCCGCTGTTTTCAGATACAAATACACATTGAAGTTTTGGATGGAATTGCCATTACTGCTAATCTGAACTCTTCTAATGAACTTGAGACTGTAAGCAGCAATTCCGATGACTTCTTATACTCCTTCAATGTCCAATATCTTCCACCGATTGTTTTGACATGTTTATTGCCCAAGTTATACCCAAGCCACCTGCCACCTATCTTTACAATCTCTGTTCGGTGGTTGGAATCCTTAGAGATTTTAAGTCTATGCTCCCAATTGGATTCGATATGGGCAAAGCAGCAAGGGATGGAAGTAATCTACCAATGGGTAGAATGGTTGCATGGTTCTTCGCTTTCCCATCTTGGGTTTGATAAGGAAATTACCCTTGGGCATAGTGGCATGAATCATGTTGGAGATGAGCATGTCTTTTCAGGAACAGTGTCCCTGGATGTTGTTATTCCTTTTTTGCAGAGTTACAACAATGAGAGACACAATGAAAACTTCCTCAAAGAATTGCATGAGTGTTGTATTTGCTATAGTGAATATGCAGGTACTGAGTTTGTCTCGTTACCATGCAAGCATTTTTTTTGCTTGAAATGCTTGCAGACCTTTACTCAGATGCATGTAAAAGAAGGCACCATTAGTTATCTTCAGTGTCCTGATTCAAAGTGTACGGTTATGATTCCACCTGGTCTTTTAAAACACTTTCTTGGTGACAAAGAGTATGAACGCTGGGAATCTATGATGCTGGAGAGAACACTTGCGTCGATGTCTGATGTTGTTTATTGCCCAAGGTGTGAAACACCTTGTATAGAGGATGAAGACCAACATGCTCAATGCTCAAAATGCTTTTTTAGCTTTTGTACCCTTTGTAAGGAACGACGCCATGTTGGCGTAGAATGCATGACAATAGATATGAAGCTTCAAATTTTGCAGGACCGTCAAAATTCGTCTAACTTAAAGGAAGATCAAAAGCAAAGGGAACGTGAAAAGATCAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTGTGCCCTTCTTGTGACATGGCAATTAATCGCATTGAAGGTTGTAACAAAATGAAGTGCGGTAATTGCGGAGAATATTTTTGTTACCGCTGCAACAAGGGCACTTGA 1728 0.441 MSTRKTRGRDHRAPQKDKDKDKDDESFTVKPLHQQPPPPSTSRNHHHHRTPRSTNTRAAQHHQQQTKFRFVKKSELPPSSPSSDSIISNSDSMAAAGSADHATPPPPPPHENHRQEEQNDHAVCDAVKVTDHGDSSSKIKEEEEDGDDVVVRLDRLLSGLEEPELSEEKLRINDQLQQDELLVVESIYGENVLKLDTCKGLRCFQIQIHIEVLDGIAITANLNSSNELETVSSNSDDFLYSFNVQYLPPIVLTCLLPKLYPSHLPPIFTISVRWLESLEILSLCSQLDSIWAKQQGMEVIYQWVEWLHGSSLSHLGFDKEITLGHSGMNHVGDEHVFSGTVSLDVVIPFLQSYNNERHNENFLKELHECCICYSEYAGTEFVSLPCKHFFCLKCLQTFTQMHVKEGTISYLQCPDSKCTVMIPPGLLKHFLGDKEYERWESMMLERTLASMSDVVYCPRCETPCIEDEDQHAQCSKCFFSFCTLCKERRHVGVECMTIDMKLQILQDRQNSSNLKEDQKQREREKINEMLSMKEIHRDSKLCPSCDMAINRIEGCNKMKCGNCGEYFCYRCNKGT* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0156 575 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 155 573 IPR031127 GO:0004842|GO:0016567
Dod02g0156 575 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 155 573 - -
Dod02g0156 575 SUPERFAMILY RING/U-box 528 573 - -
Dod02g0156 575 SMART RWD2001b 179 314 IPR006575 GO:0005515
Dod02g0156 575 MobiDBLite consensus disorder prediction 6 29 - -
Dod02g0156 575 ProSiteProfiles TRIAD supradomain profile. 365 575 IPR044066 -
Dod02g0156 575 MobiDBLite consensus disorder prediction 1 119 - -
Dod02g0156 575 Pfam RWD domain 175 308 IPR006575 GO:0005515
Dod02g0156 575 ProSiteProfiles RWD domain profile. 179 314 IPR006575 GO:0005515
Dod02g0156 575 SMART ibrneu5 524 573 IPR002867 -
Dod02g0156 575 SMART ibrneu5 437 495 IPR002867 -
Dod02g0156 575 Gene3D Ubiquitin Conjugating Enzyme 166 315 IPR016135 -
Dod02g0156 575 SUPERFAMILY UBC-like 173 308 IPR016135 -
Dod02g0156 575 SUPERFAMILY RING/U-box 437 500 - -
Dod02g0156 575 Pfam IBR domain, a half RING-finger domain 437 495 IPR002867 -
Dod02g0156 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 452 IPR013083 -
Dod02g0156 575 SUPERFAMILY RING/U-box 364 449 - -
Dod02g0156 575 ProSiteProfiles Zinc finger RING-type profile. 369 417 IPR001841 -
Dod02g0156 575 MobiDBLite consensus disorder prediction 76 96 - -
Dod02g0156 575 ProSitePatterns Zinc finger RING-type signature. 386 395 IPR017907 -
Dod02g0156 575 SMART ring_2 369 416 IPR001841 -
Dod02g0156 575 SMART ring_2 457 545 IPR001841 -
Dod02g0156 575 Gene3D - 514 574 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0156 368 573 C3H Transcription Factor Family AT2G31760 24.057 2.71e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0156 K11971 - gmx:100500662 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0156 02 2277777 2281352 Dod02g0156 02 2277777 2281352 ECH