Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0153 ATGGGAAGGTCACCATGTTGTGATGAGAGTGGCGTAAAGAAAGGGCCATGGACACCTGAAGAAGATGAGAAGCTGATTGATTATATCAACAAAAACGGCCATGGAAGTTGGAGAACACTTGCAAAGCGTGCAGGGCTCAATAGGTGCGGCAAGAGCTGCAGGCTAAGGTGGACAAATTATCTGAGGCCTGATATCAAGAGAGGGAAATTCACTGAAGAAGAGGAGCGACTTATCATCAACCTTCATTCGGTTCTAGGAAACAAGTGGTCGAAGATTGCAACCCATCTTCCCGGAAGAACCGATAATGAGATCAAGAATTTCTGGAACACTCAAATAAGGAAAAAGCTTCTCCAGATGGGTATTGATCCAGAAACTCACAAGCCAAGGACAGATTTCAATCACCTCATGAATCTTACACAGCTACTTGGCATGTCAAGTTTTGGGAATGCTACGAGTGCTTGGGGCAACCCTATTGGCCTACAAGGAGATGTGACTCAACTAGCCAAACTTCAACTGCTGCAAAATCTGTTGCAAATTATGAACAGCAATTCATTTGTTAATAACACGGGGAACCCTTATCTCTTAGGAAATCCCAGCCTCAACCAATTCAATAATGCATATCTCACTGAGTCAAACACCCTCCAAACTATGGAACCTTTAGTCTTGAAAAATGAAGAATATGCAAACCCTGCTGGTATATTCTCTCAAGAACAACCTTCTCAGCATGGTGTTTCAAAATCATGGGCAGATATAGAGGGTGGACCTAACCCACAAGATCTTGATTACAGCAAAATTAGCAGCATTTTTCATGAGAATCAAGCAGAAAACCCATTGCCTGCATTAATAGCATCCTTTCCTGGAACGGAGACCTTCAACCAGATGGACAATAGTTGTTGCAACACAGCTCAAGCTTCCACTCATGAGTCACCTTCCAACACAGTCTTTGATGATTGGGAGAAATTACTTGAGGATGAAACAAGTGGTTCCTACTGGAAAGAGATTCTGGAGTAA 1011 0.4283 MGRSPCCDESGVKKGPWTPEEDEKLIDYINKNGHGSWRTLAKRAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEERLIINLHSVLGNKWSKIATHLPGRTDNEIKNFWNTQIRKKLLQMGIDPETHKPRTDFNHLMNLTQLLGMSSFGNATSAWGNPIGLQGDVTQLAKLQLLQNLLQIMNSNSFVNNTGNPYLLGNPSLNQFNNAYLTESNTLQTMEPLVLKNEEYANPAGIFSQEQPSQHGVSKSWADIEGGPNPQDLDYSKISSIFHENQAENPLPALIASFPGTETFNQMDNSCCNTAQASTHESPSNTVFDDWEKLLEDETSGSYWKEILE* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0153 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod02g0153 336 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod02g0153 336 CDD SANT 69 110 IPR001005 -
Dod02g0153 336 CDD SANT 16 61 IPR001005 -
Dod02g0153 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod02g0153 336 PANTHER MYB TRANSCRIPTION FACTOR 1 336 - -
Dod02g0153 336 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod02g0153 336 SMART sant 13 63 IPR001005 -
Dod02g0153 336 SMART sant 66 114 IPR001005 -
Dod02g0153 336 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod02g0153 336 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod02g0153 336 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Dod02g0153 336 Gene3D - 69 116 - -
Dod02g0153 336 Gene3D - 13 66 - -
Dod02g0153 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0153 Dod-Chr2 2225314 2226434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0153 1 336 MYB Transcription Factor Family AT5G16770 47.989 1.05e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g0153 Myb_DNA-binding 3.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0153 K09422 - gmx:778082 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0153 02 2225314 2226434 Dod02g0153 02 2225314 2226434 ECH