Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0150 ATGGGCAGAAAGAAACCCAAAGACCCACCCCAAAGCGACGCCGTTTCACGCTCTCCCGGCATTTTCACCACGCTCTTCGGCGCCGCGCCAGAACAGGCCACCGCCTCCTTATTCTCCGACAACAACCCCTTCCGCAGAAAGCCCCAGCAACCTTCTCCTGTCCCCGAATCAACCGAACAAACTCAAATCCCCAACAATGCCGATTCCAGCGGGGAGAAGAACAGGAAGAGGAAAAACGGGGAGGAACAAAACCCATCCTCTGTCGATCATTCGGGTTCCGCAATCGAAGCTTCGGATAAGAAGGTGAAGAAGAAGAAGCACCGCGAATCCAACGAAGAAACGAAAGTCCCTGAAGAAGGGAAGAAGAGGAAGAGGGAGGAGCTTGAGAAGGAGTGGGAGGAGAGGAAGTACGGCAGCGTGGAGGAGGAGGAAGGAAAGGAATCGTCGTTGTTGTTGGACGGCCCAAAAGTTGGGAGCAAGAGGAAGACGCTGCATAACCCTGCCGATATGATGGTCTCGAAGGAAGGGTTTGATGATGAAGATAAGCTCTTGAGGACGGTTTTCGTTGGGAATTTGCCGCTGAAGGTGAAGAAGAAGACATTGCTAAAGGAGTTCAAGAAGTTTGGTGAGGTTGAGTCTGTGAGGATTCGTTCTGTTCCGATACAAGATACCAAAAAGCCTAGAAAGGGGGCTATCCTTGCGAAGAAAATAAATGATTCTGCTGATAGTGTTCACGCTTACATTGTTTTCAAAACAGAAGAATCTGCCCAGGCTTCTTTGTCCCACAACATGGCAGTGGTTGATGGGAATCACATTCGCGTAGATCGGGCATGCCCACCCCGCAAGAAACATAAACGGGAGAGTGCTCCGATTTATGATAACAAGAGAACTGTTTTTGTGGGCAACCTTCCATTTGATGTGAAGGATGAAGAACTATATCAGTTATTTTGTGGCATATCTAACCTGGAATCCAGTGTAGAAGCTATTAGAGTTGTAAGAGATCCACATCTTAATGTTGGAAAGGGTATTGGCTATGTGCTGTTTAAAACAAAGGAAGCTGCTAATTTTGTTCTTAAGAAACGTAACTTGAAGGTTCGAGATCGAGAATTGAGACTCAGCCATGTCAAAGCAGATGCCACCCCATCTAAAAGGCCAAACCCATCAACAGAGCAAACTCCCAGTACACCTGCAAAGAAGTTCTCTGTGGCTTCAAGGTCTCCTTCAAGCAGTATTAACAGGTCGACCAGAAAGGCTAATGCATCTTACCAGGGTCTGCGTGCAACCAAATCTGATATCAAGAAGAAAATTCATGGAGTGGAGAAACCAAAAGAGCGCAAGATGAAAAGGCCATCTGTTGCTGCCAGGAAGGCTAAAGCAAAATTGCTCAAAGATAGTGGTTCATCAAAACAAGCAGGGGTAAAACGCAAGCTTGATAGTCATACCCCTGATAGCTCCCTAAGAACTAAGAAAGTGAAAAAGAACAGGTAG 1488 0.4691 MGRKKPKDPPQSDAVSRSPGIFTTLFGAAPEQATASLFSDNNPFRRKPQQPSPVPESTEQTQIPNNADSSGEKNRKRKNGEEQNPSSVDHSGSAIEASDKKVKKKKHRESNEETKVPEEGKKRKREELEKEWEERKYGSVEEEEGKESSLLLDGPKVGSKRKTLHNPADMMVSKEGFDDEDKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDSADSVHAYIVFKTEESAQASLSHNMAVVDGNHIRVDRACPPRKKHKRESAPIYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSVEAIRVVRDPHLNVGKGIGYVLFKTKEAANFVLKKRNLKVRDRELRLSHVKADATPSKRPNPSTEQTPSTPAKKFSVASRSPSSSINRSTRKANASYQGLRATKSDIKKKIHGVEKPKERKMKRPSVAARKAKAKLLKDSGSSKQAGVKRKLDSHTPDSSLRTKKVKKNR* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0150 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 279 IPR000504 GO:0003723
Dod02g0150 495 MobiDBLite consensus disorder prediction 1 163 - -
Dod02g0150 495 CDD RRM2_RBM34 297 373 IPR034221 -
Dod02g0150 495 Gene3D - 285 383 IPR012677 -
Dod02g0150 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 377 IPR000504 GO:0003723
Dod02g0150 495 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 39 493 - -
Dod02g0150 495 MobiDBLite consensus disorder prediction 34 69 - -
Dod02g0150 495 PANTHER RNA-BINDING PROTEIN 34 39 493 - -
Dod02g0150 495 SUPERFAMILY RNA-binding domain, RBD 290 388 IPR035979 GO:0003676
Dod02g0150 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 229 IPR000504 GO:0003723
Dod02g0150 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 370 IPR000504 GO:0003723
Dod02g0150 495 SUPERFAMILY RNA-binding domain, RBD 176 286 IPR035979 GO:0003676
Dod02g0150 495 SMART rrm1_1 297 373 IPR000504 GO:0003723
Dod02g0150 495 SMART rrm1_1 186 275 IPR000504 GO:0003723
Dod02g0150 495 MobiDBLite consensus disorder prediction 382 426 - -
Dod02g0150 495 Gene3D - 181 284 IPR012677 -
Dod02g0150 495 CDD RRM1_RBM34 185 275 IPR034220 -
Dod02g0150 495 MobiDBLite consensus disorder prediction 70 84 - -
Dod02g0150 495 MobiDBLite consensus disorder prediction 428 447 - -
Dod02g0150 495 MobiDBLite consensus disorder prediction 374 495 - -
Dod02g0150 495 MobiDBLite consensus disorder prediction 457 489 - -
Dod02g0150 495 MobiDBLite consensus disorder prediction 94 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0150 Dod-Chr2 2187955 2192020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0150 187 362 Eukaryotic Initiation Factors Gene Family AT1G71770 26.257 2.40e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0150 K14837 - gmx:100809622 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0150 02 2187955 2192020 Dod02g0150 02 2187955 2192020 ECH