Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0143 ATGGCAACGTTAGAATCAGCTCTCTCCATCTTCGCTTCTCACCGTTTTGCCAATAACTATGGTCTCTCTGCAAAACTACCAGACTCCAAAAAGCTCCATGCTTCCCCCTCCCTCTTTTCCCTTCCCAAAAACCTCGTCTTATCCTCCAAAGCCTCCTCTTCCTCCAAAAGACTCTGCTTCATCTTGTGCTCTGCTTTGCAACAAGTAGCAGAAACAGAGTCAACAATAACAACAGAGGAAAAACCAGAGCAACCCCAGGAACCAAAAAACATCAAGAAGAAGCTCTACGTGTCTAACATATCTTGGTCTCTGTCGGTGACAGATATCAAGGACCTGTTCAGTCAATGCGGAACTGTAACTGATGTCGAGATCATAAAGAACAAGGATGGTAGGAGCAGAGGATTTGCCTTCGTTACTATGGCTTCAGGGGAAGAGGCTCTAGCTGTTGTTGAGAAATTTGACTTCTTATTAAACCACTTGAACACATCCATTTTTTTTGGAAGGATAATAAGGGTGGAACTTGCAAAGAGATTCAAGAAACCTTCTCCTCCGCGTGCTCTGGCTCCAGGTCCTCCTCCTGGCGAGACACGCCATGTAATTTATGCATCTAACCTTGCATGGAAAGTAAGATCAACACATCTCAGAGAATTCTTCACTGAGAATTTCAAAACACCAGTTTCAGCCAGGGTTGTCTTTGACAGCCCATCTGGAAGATCTGCCGGGTATGGATTTGCTTCTTTTCCTACAAAGGAGGATGCAGAGGCTGCAATTTCTGCTTTGGATGGGAAGGAGTTAATGGAACGACCACTTCGCCTCAAATTGAGTGAAAAGAAAGTTAAAGAAGCTGCAAGTGAAAAGGACGAAGCTGGAAGTGAAAAAGATGAAGACCAAGATGCTGACGCTCAGCTGGAAGAATCTTAG 921 0.4452 MATLESALSIFASHRFANNYGLSAKLPDSKKLHASPSLFSLPKNLVLSSKASSSSKRLCFILCSALQQVAETESTITTEEKPEQPQEPKNIKKKLYVSNISWSLSVTDIKDLFSQCGTVTDVEIIKNKDGRSRGFAFVTMASGEEALAVVEKFDFLLNHLNTSIFFGRIIRVELAKRFKKPSPPRALAPGPPPGETRHVIYASNLAWKVRSTHLREFFTENFKTPVSARVVFDSPSGRSAGYGFASFPTKEDAEAAISALDGKELMERPLRLKLSEKKVKEAASEKDEAGSEKDEDQDADAQLEES* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0143 306 MobiDBLite consensus disorder prediction 272 290 - -
Dod02g0143 306 MobiDBLite consensus disorder prediction 291 306 - -
Dod02g0143 306 SUPERFAMILY RNA-binding domain, RBD 184 280 IPR035979 GO:0003676
Dod02g0143 306 SUPERFAMILY RNA-binding domain, RBD 79 184 IPR035979 GO:0003676
Dod02g0143 306 PANTHER OS02G0815200 PROTEIN 14 291 - -
Dod02g0143 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 177 IPR000504 GO:0003723
Dod02g0143 306 SMART rrm1_1 94 173 IPR000504 GO:0003723
Dod02g0143 306 SMART rrm1_1 199 273 IPR000504 GO:0003723
Dod02g0143 306 Coils Coil 272 292 - -
Dod02g0143 306 MobiDBLite consensus disorder prediction 272 306 - -
Dod02g0143 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 154 IPR000504 GO:0003723
Dod02g0143 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 271 IPR000504 GO:0003723
Dod02g0143 306 PANTHER CHLOROPLAST, PUTATIVE-RELATED 14 291 - -
Dod02g0143 306 Gene3D - 49 179 IPR012677 -
Dod02g0143 306 Gene3D - 180 288 IPR012677 -
Dod02g0143 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 277 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0143 Dod-Chr2 2102704 2105670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0143 95 278 Eukaryotic Initiation Factors Gene Family AT1G49760 30.412 1.22e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0143 - - gmx:100793319 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0143 02 2102704 2105670 Dod02g0143 02 2102704 2105670 ECH