Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0116 ATGGAGCTTTCTCAGCTTGGTTTTCTGGAGGAACTATTGGCTCCTAAGAGGGACACATGGGATGCTTTGTCCACTGGATTGAATGAGCTACTCCCTAGTGGTGGTTGGAGCTTTGACTCTTTTGATGGGAACCCATCTTTGGCTACTTTGAATCCTTCATTTGCTGCATTCTCAACACCAATAGACCATAGATTTGAGTGCCCTTATGGTTCTGGTGAGGCTGCAGCATACCCTTTTGCTGATGGCTTCACAATGTCAGTGCTTGGTTCATCATACACCGGGAATAATGATGGTGACTCAGTACCACTCTTGCCACAAGAAGACAACAACCACAGCATCATCAACACAACAATGGGGGATGAAGAGCTTGGCTTTCTGGGCAGTGATACTCACAGTTTGGAAGAGAGAAACAGTTCCTGCAAAGTTGAGGAACAAGTTGCTGAGGTTCCAGTGTTCAACATGGGCATGTGTGGAGACAAAAAAACCAACAAGTCTAAGAAACTAGAAGGGCAGCCCTCAAAGAACCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAACGATCGCCTTTCCATGTTAAGGTCAATAGTCCCGAAGATAAGCAAGATGGACAGGACCTCCATTCTTGGAGATACCATAGATTACATGAAAGAGCTTCTAGAAAGGATTGGCAAGTTGCAAGAAGAAGCAATGGACGTGGGAACAGATAAGTTACATCACTTGGGAATTTCTAAGGAGCTAAAGCCAAATGAAGCAATGGTAAGAACTTCCCCCAAGTTTGATGTTGAGAGGAGAGACCAGGATACGAGGATAAGCATCTGCTGTGCCACAAAGCCAGGATTGTTACTGTCAACAGTGAATACATTGGAAGCATTAGGCCTGGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTCTCAATGCAAGCATCTTGCTCAGAGGTTTTGTACCTTTTTTTATTAGTGGCTTCACTCTTTGTTTACATGCTTGAAAAAAGAAATACATATTTCTTTATTCTTCTGACTTATTGCTATCTTGGTCTCAGGCTGCAGAGCAGAGAAATTGTATTAGCCCCGAAGAAGTAA 1089 0.4334 MELSQLGFLEELLAPKRDTWDALSTGLNELLPSGGWSFDSFDGNPSLATLNPSFAAFSTPIDHRFECPYGSGEAAAYPFADGFTMSVLGSSYTGNNDGDSVPLLPQEDNNHSIINTTMGDEELGFLGSDTHSLEERNSSCKVEEQVAEVPVFNMGMCGDKKTNKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEAMDVGTDKLHHLGISKELKPNEAMVRTSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSMQASCSEVLYLFLLVASLFVYMLEKRNTYFFILLTYCYLGLRLQSREIVLAPKK* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0116 362 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 324 - -
Dod02g0116 362 Pfam Helix-loop-helix DNA-binding domain 176 219 IPR011598 GO:0046983
Dod02g0116 362 Gene3D - 159 235 IPR036638 GO:0046983
Dod02g0116 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Dod02g0116 362 PANTHER - 2 324 - -
Dod02g0116 362 CDD ACT_UUR-ACR-like 269 310 - -
Dod02g0116 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 231 IPR036638 GO:0046983
Dod02g0116 362 SMART finulus 176 225 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0116 Dod-Chr2 1777487 1779536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0116 152 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 66.667 4.42e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod02g0116 HLH 8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0116 - - gmx:100806571 477.248