Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0098 ATGAAGGTGGCAGGTCAAATGAGGAATCTGGTTCTTCTCCTGTGGTGGTTTAGAATTGTTGTACTGCTCTGCTTCTTGCTCGGTGCCTCTTCTCGGAAGACCTCATTTTCTAGAAGAGAGTTAAGCGATATCAACATCTCAGGATCTGGTCCTTCTCCAGTCACCCTGAATTCAGAAAATCCTCGCCAGGTGGTCATTCAAAACGGAGTTGTTTCCGTCACTTTAGCAAAGCCCGAGGGCTATATCCTTGGAATATCATATGGTGGAATTGACAACGTACTTGAAGCTAAAAATCAAGGAAACGATAGAGGGTACGTGGACGTTGTTTGGAATGAACCAGGACAACCTGGCGGCGAACCGAGAATCCAAGGGACAAGTTTTTCAGTCGTTGTAGCGGACGAGAATATAGTGGAGGTTTCATTTTCAAGAACATGGACACATGCGGATGGCTCAACTATCCCTGTAAACGTAGACAAAAGGTATATACTGCGAAAAGGCGATTCCGGGTTTTATTCATACATAATATTTGATCGTCCAGAAGGATTCCCTGCAGTGGAAATTGATCAAATTAGGATTGTTTACAAGCTCAATAGTGACAGGTTCCATTACATGGCTATAACAAATACTAGGAAAAGAGCTATGCCAACGATGGCAGATAGAGAAAGGGGTAAGCCCTTAGCTTATCCTGAAGCTGTTCTCTTAACCAATGCCTCAGACCCAAGTTTTCGGGGAGAGGTGGATGACAAATACCAATACTCCATTGAGAACGAAGACAACAGTGTTCATGGCTGGATTACCATGGATTCTGAAGCACCCGTGGGTTTCTGGGTTATAACACCCAGCAATGAGTTCCGCAATTGTGGGCCCATTAAGCAAGACCTCACTTCTCATGTTGGCCCATTTTCCCTCTCCATGTTTGTGAGCAACCACTATGCTGGCAGGGAGGTAAACATGCTCTTTAAAGAAGGGGAGACTTATACAAAGGTTTTCGGCCCCGTTTTTGTCTACCTCGATTCTGCTTCAAACAACGCTGATTTCCAACAACTGTGGTCAGATGCCGTACAAAAGCGATCCAATGAAGTCACAAGCTGGCCTTACGATTTCCCTCGATCAAATGATTTCCTTCCAGCCAATAAACGTGGAACAGTAACAGGACGGTTGCAAGTCCATGATAGGTTCATCCAGCGAGAGACACTTCAATATGCTAACAATGCTTACATTGGTCTAGCTTTGCCTGGATACCCCGGATCATGGCAGAAAGAAACCAAGGGTTACCAATTCTGGACTCGAACTGATAGGAATGGAAACTTTGTAATAAAAAATATTGTACCTGGGGACTATAATTTGTATGCATGGGTTCCTGGCTTTATTGGAGATTACAGATATAATACCATAATCACCATCACACCAGGATGCTCCATCAACTTGAATTCACTTGTATATAATCCTCCAAGAAACGGTCCTACCCTTTGGGAAATTGGCATCCCTGATCGCACAGCTGCTGAATTCTATGTGCCAGACCCTTACCCTACGCTATTGAACACGTTATACAAGAATGATAAGAGAGACAATTTTAGGCAATACGGGTTGTGGGAACGGTACGCTGATTTATATCCAAATGGTGATCTTGTGTACACTGTTGGTGTTAATGATTATAGCAAGGATTGGTTTTTTGCTCATGTTACAAGGAAAACAGGAGATAAGACCTACCAGCCAACCACACGGCAGATTGTATTTGAACTTCAAAACGTGGCATCGAGAGGAACCTACACACTACAATTGGCATTGGCATGCGCCTCTGAATCTGTACTGCAGGTCCGGTTCAATGACCCAAATGCAAATCCTCCTGACTTCACAACAGGGCTAATAGGAGGCGACAATGCCATTGCGAGGCACGGCATCCACGGATTGTATTTCCTGTTTAGCATAGGTGTAGGTGGCGATCATTTGGTACAGGGAAAGAACACCATCTATCTGAGGCAATCAAGAGCTATTACTCCTTTCGAAGGAGTCATGTATGATTATATCCGCTTAGAAGGTCCTCCAGTTCCAACTACTTGA 2061 0.4415 MKVAGQMRNLVLLLWWFRIVVLLCFLLGASSRKTSFSRRELSDINISGSGPSPVTLNSENPRQVVIQNGVVSVTLAKPEGYILGISYGGIDNVLEAKNQGNDRGYVDVVWNEPGQPGGEPRIQGTSFSVVVADENIVEVSFSRTWTHADGSTIPVNVDKRYILRKGDSGFYSYIIFDRPEGFPAVEIDQIRIVYKLNSDRFHYMAITNTRKRAMPTMADRERGKPLAYPEAVLLTNASDPSFRGEVDDKYQYSIENEDNSVHGWITMDSEAPVGFWVITPSNEFRNCGPIKQDLTSHVGPFSLSMFVSNHYAGREVNMLFKEGETYTKVFGPVFVYLDSASNNADFQQLWSDAVQKRSNEVTSWPYDFPRSNDFLPANKRGTVTGRLQVHDRFIQRETLQYANNAYIGLALPGYPGSWQKETKGYQFWTRTDRNGNFVIKNIVPGDYNLYAWVPGFIGDYRYNTIITITPGCSINLNSLVYNPPRNGPTLWEIGIPDRTAAEFYVPDPYPTLLNTLYKNDKRDNFRQYGLWERYADLYPNGDLVYTVGVNDYSKDWFFAHVTRKTGDKTYQPTTRQIVFELQNVASRGTYTLQLALACASESVLQVRFNDPNANPPDFTTGLIGGDNAIARHGIHGLYFLFSIGVGGDHLVQGKNTIYLRQSRAITPFEGVMYDYIRLEGPPVPTT* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0098 686 Pfam Polysaccharide lyase family 4, domain II 403 476 IPR029413 -
Dod02g0098 686 SUPERFAMILY Starch-binding domain-like 375 478 IPR013784 GO:0030246
Dod02g0098 686 Gene3D - 487 679 - -
Dod02g0098 686 Pfam Polysaccharide lyase family 4, domain III 489 678 IPR029411 -
Dod02g0098 686 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 59 682 - -
Dod02g0098 686 CDD RGL4_C 491 679 - -
Dod02g0098 686 Gene3D - 375 478 - -
Dod02g0098 686 SUPERFAMILY Galactose mutarotase-like 58 341 IPR011013 GO:0003824|GO:0005975|GO:0030246
Dod02g0098 686 Pfam Rhamnogalacturonate lyase family 53 246 IPR010325 -
Dod02g0098 686 Gene3D - 55 348 IPR014718 GO:0030246
Dod02g0098 686 CDD RGL4_M 379 479 IPR029413 -
Dod02g0098 686 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 59 682 - -
Dod02g0098 686 SUPERFAMILY Galactose-binding domain-like 486 679 IPR008979 -
Dod02g0098 686 CDD RGL4_N 57 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0098 Dod-Chr2 1570228 1577561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0098 63 681 Polysaccharide Lyase AT1G09890 55.217 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0098 K18195 - gmx:100776664 973.385