Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0078 ATGGTGTTGAAAGGTGATCACAGAATAGAGTTTTCGAGCGACGATGAGCCATCTCCGAGAGGGGTATTAGAGACCCCTGTTTCGGGAACAGAGTCCGACAACAGCGGCACCAGCAGCAGCAGCTGCTGCAGCTCCTCTTCGCCGGAGAAGTTGCCGCTTCCACCACCGCCGGGAGCATCATCTTTGGCACGTGGGGGTCGCAGGGAAGGTCACGTGCAGCAATGGAAGTCGATGATCGACGTGTTCAAGTTCAAGTCTGTCAGGAAATTTACGACGTTTCCTCTGCTTGCTGTGGGACACGAAATCACTCGGAAGAGCTTGACGAAGAAGCTTGCTCGTATTCGAAGCGCTGAAGATAGTATCGATATGATTGGCGCCATTCCCACGAAGCCCTCTTGGAGAAACTTCGATTACGCAGAGCTTGCAGCAGCTACTGATGATTTCAGTTCAGAGAACTTGGTTGGTAAAGGTGGTCATGCAGAAGTGTACAAGGGACACCTACCTGATGGCCAAGTAATAGCAGTAAAAAGGCTGATGAAGAATGACAAGGATGCTGGGGACAGAGCTGGTGATTTCTTGACAGAACTTGGGATCATTGCACACATAAACCACCCAAATGCAACACGCCTTCTTGGGTTTGGGATTGATCGTGGCCTATACTTTGTCCTAGAATATGCTCCACACGGCAGCCTTGCTTCTTTGCTCCTTGGTTCTGAATGCTTGGAGTGGAACATAAGGTTCAAGGTAGCTGTTGGGGTGGCAGAGGGGTTGCAATATCTCCATCAAGATTGCCCAAGAAGAATCATTCACAGGGACATCAAAGCCTCCAACGTACTGCTCAATGAAAATTATGAAGCTGAGATTTCAGATTTTGGATTGGCAAAGTGGCTTCCAAGCAAGTGGGCCCACCATGTTGTCTTCCCAATAGAAGGCACATTTGGGTATTTGGCCCCAGAGTACTTCATGCATGGAATTGTGGATGAGAAGACTGATGTATTTGCATTTGGGGTTTTGTTGCTGGAGATCATAACAGGTCGTCGAGCTGTTGACTCAGCTAGTAAGCAAAGTCTTGTGATTTGGGCAAAGCCACTTCTGGATACAAAGAATGTCAAGGAAATAGCAGACCCCAGATTAGAAGAGGAATATGACATTACTGAAATGAAGCGCGCCATGGTTACAGCTTCCTTGTGTGTCCACCAGGTGTCCTCCAAGAGGCCATACATGAATCAGGTTGTGCAGCTACTAAAGGGTGAAGTGGCAGCTGTTGAACCAAAACAAAATTCAGCAGCACCAAGATCACTCTTGTTAGAGGCCTGTGACCTTGAGGACTATACTTGCTCTAATTACTTGAAGGACCTTAATCGCCACAGGGAGTTAATCAATGAGTGA 1389 0.4788 MVLKGDHRIEFSSDDEPSPRGVLETPVSGTESDNSGTSSSSCCSSSSPEKLPLPPPPGASSLARGGRREGHVQQWKSMIDVFKFKSVRKFTTFPLLAVGHEITRKSLTKKLARIRSAEDSIDMIGAIPTKPSWRNFDYAELAAATDDFSSENLVGKGGHAEVYKGHLPDGQVIAVKRLMKNDKDAGDRAGDFLTELGIIAHINHPNATRLLGFGIDRGLYFVLEYAPHGSLASLLLGSECLEWNIRFKVAVGVAEGLQYLHQDCPRRIIHRDIKASNVLLNENYEAEISDFGLAKWLPSKWAHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLEIITGRRAVDSASKQSLVIWAKPLLDTKNVKEIADPRLEEEYDITEMKRAMVTASLCVHQVSSKRPYMNQVVQLLKGEVAAVEPKQNSAAPRSLLLEACDLEDYTCSNYLKDLNRHRELINE* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0078 462 Gene3D Transferase(Phosphotransferase) domain 1 227 432 - -
Dod02g0078 462 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 13 462 - -
Dod02g0078 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Dod02g0078 462 MobiDBLite consensus disorder prediction 1 17 - -
Dod02g0078 462 SUPERFAMILY Protein kinase-like (PK-like) 132 424 IPR011009 -
Dod02g0078 462 MobiDBLite consensus disorder prediction 25 48 - -
Dod02g0078 462 PANTHER OS08G0249100 PROTEIN 13 462 - -
Dod02g0078 462 SMART serkin_6 148 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod02g0078 462 ProSitePatterns Protein kinases ATP-binding region signature. 154 176 IPR017441 GO:0005524
Dod02g0078 462 Pfam Protein kinase domain 150 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod02g0078 462 ProSiteProfiles Protein kinase domain profile. 148 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod02g0078 462 MobiDBLite consensus disorder prediction 1 69 - -
Dod02g0078 462 Gene3D Phosphorylase Kinase; domain 1 107 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0078 Dod-Chr2 1305472 1311396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0078 136 411 Trihelix Transcription Factor Family AT1G68690 46.154 2.78e-70 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dod02g0078 Pkinase 2.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0078 - - gmx:100818314 694.501