Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0016 ATGGAGGAAATGTACGGAGTGCCGTCGACGGCGGAGTACGCCGACAAGGCCCTCATGACGCCGGAGAATCTGATCTTCCCGGCGGACTACCACAGCTTCCTCATGTCCACCTCTTCCTCCTCCTCGGCCGCCGCCTCCCGGATTCCCGTGTTCGGATCGGACGAGCTCCTCTCCGCCGCTGCCGGGATTCATCGGCAGGCGGAGGAGGACGAGGCGGTGGCGTCCACGGTGATGAAGGCCAAAATCGCGTCCCATCCTCACTACCCTCGGCTTCTCCAAGCCTACATCGACTGCCAGAAGGTCGGCGCGCCTCCGGAAATCGCGTGCTTCTTGGAGGAAATCCGGCGAGAAAACGACCTTTGCAAGAGGGACGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACGTACTGTGACTTGCTGGTGAAGTATAAATCGGACCTGGCTCGGCCTTTCGATGAAGCAACAAGCTTCCTTAACAAGATCGAAATGCAGCTTAGCCACCTCTGCTGCACCGGCGCTTCTGTTCCTACTCTTTCTGATGATGGGGGCGTGTCTTCGGACGAAGATTTTAGTGCTGGCGATGGTGATGCTCAAGACGGTCAATCGAGGGGTGAGGACCGTGAGCTCAAGGATATGCTTTTACGCAAGTTTGGGAGTCACATTGGCACTTTGAAATTGGAGTTCTCAAAGAAGAAAAAGAAGGGTAAGCTACCGAAGGAAGCAAGACAAACACTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCTACGGAGGCTGATAAAATTGAACTGGCTAAGTCAACAGGGCTGGACCAAAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAACCATCTGAGAATATGCAGTTCTCTATGATGGAAAATCTGACTGGACGGTTCCTTGCTGCTGATGAATGTCAATGA 966 0.528 MEEMYGVPSTAEYADKALMTPENLIFPADYHSFLMSTSSSSSAAASRIPVFGSDELLSAAAGIHRQAEEDEAVASTVMKAKIASHPHYPRLLQAYIDCQKVGAPPEIACFLEEIRRENDLCKRDVVSTCFGADPELDEFMETYCDLLVKYKSDLARPFDEATSFLNKIEMQLSHLCCTGASVPTLSDDGGVSSDEDFSAGDGDAQDGQSRGEDRELKDMLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLTGRFLAADECQ* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0016 321 SUPERFAMILY Homeodomain-like 236 307 IPR009057 -
Dod02g0016 321 Pfam KNOX2 domain 130 176 IPR005541 GO:0003677|GO:0005634
Dod02g0016 321 SMART KNOX2_2 126 177 IPR005541 GO:0003677|GO:0005634
Dod02g0016 321 CDD homeodomain 247 299 IPR001356 GO:0003677
Dod02g0016 321 Pfam Homeobox KN domain 255 294 IPR008422 GO:0003677|GO:0006355
Dod02g0016 321 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 308 - -
Dod02g0016 321 MobiDBLite consensus disorder prediction 186 212 - -
Dod02g0016 321 Pfam KNOX1 domain 78 119 IPR005540 GO:0003677|GO:0005634
Dod02g0016 321 Pfam ELK domain 215 236 IPR005539 GO:0003677
Dod02g0016 321 SMART ELK_2 215 236 IPR005539 GO:0003677
Dod02g0016 321 SMART HOX_1 237 302 IPR001356 GO:0003677
Dod02g0016 321 Gene3D - 234 308 - -
Dod02g0016 321 ProSiteProfiles 'Homeobox' domain profile. 235 298 IPR001356 GO:0003677
Dod02g0016 321 ProSitePatterns 'Homeobox' domain signature. 273 296 IPR017970 GO:0000981|GO:0006355
Dod02g0016 321 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 308 - -
Dod02g0016 321 SMART KNOX1_2 76 120 IPR005540 GO:0003677|GO:0005634
Dod02g0016 321 ProSiteProfiles ELK domain profile. 215 235 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0016 Dod-Chr2 511093 519684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0016 1 315 Homeobox Transcription Factor Family AT1G23380 65.861 4.96e-146 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dod02g0016 KNOX2 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0016 - - gmx:100794719 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0016 02 511093 519684 Dod02g0016 02 511093 519684 ECH