Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3765 ATGGGTTACATTCAATACTGTAGAAACGGTCTTTGGCGCATCTATGCCACCAATCCGTTCAAAAATTCCCCGAAATCGCACTTCACTTTCGCAACCCATGGAACGCCCTCAAATCCCAAATCCCATTTCATTCCGAAGTCTCTCTATTCCACGGGCCCCTCAGCCTCGGCAAGAATAGTGCATGACCTTCTGGCGGAGCTGGAGAGAGACAGGGTCAGGGAGAAACAGCAGAGAATAAGTGCCGGACTAGACACCGCCGACATCGACGCCGAATACGAGGAGGACTACATGGGCGTGGGCCCACTCATCCAGAAGCTCGAGAAGGAGAAGCTCAAGGACTCCCCTGACCTATACGGCATGGACGAGCCGTCCGACTCCGACAGCGAGGAAGACGACGAGAGGTTCAGCCCGGATGCAATCCAGAAGCGCTTCGACGACTTCGAGAGGAAGTTCAAGAAGCACCAGGACATGCTCAAGAACTTCGCCGACGCCGAGACGCTCGACGACGCCTTCAAGTGGATGACCAGGATCGACAGGTTCGAGGACAATCATTTCAAGCTGCGCCCTGAGTACAGGGTTATTGGGGAGCTGATGAATCGCCTGAAGGTGGTGACTGATCAGAAGGAGAAGTTCGTTCTGCAGCACAAGCTGAACAGGGCGATGAGGTTGGTGCAGTGGAAGGAGGCTTATGATCCTGAGAACCCCGCTAATTACGGCGTCATTCAGCACGAGCAGGTTGGGCCCAATGTGGATGCGCTGCAGAATTCGGGGTTCGAAAAGGAGAATCAGGTCACGCAAGGGGAGAGTGCTGAGGCTGATGCCGGTGATGATGATGATGCTGAGGAAGAGTTTGATGACATGAAAGAGAAAGACAACATACTGCTGGCGAAACTTGAGGCTATTGATAAGAAGCTTGAGGAGAAACTTGCTGAAATTGAATATACTTTTGGAAGAAAGGGTAAGCTTCTGGAGGAAGAGATCAGGGATCTTGCTGAGGAGAGGAATGAATTAACTGAGAAGAAGAGAAAGCCTCTTTACCGGAAGGGTTTTGATGTAAAATTGATAGATGTGAACAGAACTTGTAAAGTCACAAAGGGAGGACAAGTTGTTAAGTACACTGCTATGTTAGCTTGTGGCAACTATAATGGTGTTGTTGGTTTTGCCAAAGCCAAAGGCCCTGCAGTCCCAGTTGCCCTACAGAAGGCATATGAGAAATGCTTTCAGAATTTACATTATGTGGAGCGACATGAAGAACATACAATTGCACATGCAGTTCAGACGGCTTATAAAAAGACCAAGGTTTATCTCTGGCCTGCACCCACTGCAACAGGCATGAAAGCCGGTAGAATAGTCCAAACCATATTACATTTAGCTGGTTTTAAGAATGTCAAGTCAAAGGTCGTTGGTTCCAGAAATCCTCACAACACAGTTAAGGCTGTGTTCAAAGCCCTTAATGCAATTGAAACGCCAAGGGATGTTCAAGAGAAGTTTGGGCGGACTGTGGTTGAAAAGTATCTGTTGTGA 1524 0.4875 MGYIQYCRNGLWRIYATNPFKNSPKSHFTFATHGTPSNPKSHFIPKSLYSTGPSASARIVHDLLAELERDRVREKQQRISAGLDTADIDAEYEEDYMGVGPLIQKLEKEKLKDSPDLYGMDEPSDSDSEEDDERFSPDAIQKRFDDFERKFKKHQDMLKNFADAETLDDAFKWMTRIDRFEDNHFKLRPEYRVIGELMNRLKVVTDQKEKFVLQHKLNRAMRLVQWKEAYDPENPANYGVIQHEQVGPNVDALQNSGFEKENQVTQGESAEADAGDDDDAEEEFDDMKEKDNILLAKLEAIDKKLEEKLAEIEYTFGRKGKLLEEEIRDLAEERNELTEKKRKPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3765 507 Pfam Ribosomal protein S5, C-terminal domain 429 496 IPR005324 GO:0003735|GO:0005840|GO:0006412
Dod01g3765 507 SUPERFAMILY dsRNA-binding domain-like 346 415 - -
Dod01g3765 507 Coils Coil 295 315 - -
Dod01g3765 507 Coils Coil 320 343 - -
Dod01g3765 507 MobiDBLite consensus disorder prediction 259 281 - -
Dod01g3765 507 MobiDBLite consensus disorder prediction 120 134 - -
Dod01g3765 507 Gene3D - 415 504 IPR014721 -
Dod01g3765 507 Pfam Ribosomal protein S5, N-terminal domain 350 414 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod01g3765 507 SUPERFAMILY Ribosomal protein S5 domain 2-like 419 497 IPR020568 -
Dod01g3765 507 PANTHER 28S RIBOSOMAL PROTEIN S5, MITOCHONDRIAL 71 507 - -
Dod01g3765 507 Gene3D - 300 411 - -
Dod01g3765 507 MobiDBLite consensus disorder prediction 113 138 - -
Dod01g3765 507 PANTHER RIBOSOMAL S SUBUNIT 71 507 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod01g3765 507 ProSiteProfiles S5 double stranded RNA-binding domain profile. 350 413 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3765 Dod-Chr1 79527623 79534483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3765 362 485 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 27.273 5.79e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3765 K02988 - jre:108980411 714.531