Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3749 ATGGCAGCGACGACAACTACGACCACCGCAGCTCCGGCGCGGCAGCTGTCTCAGAAGGAGGCTGATATCCAGATGATGCTTGCAGCGGAGGTCCATCTCGGCACCAAGAACTGCGATTTCCAGATGGAGCGCTACATTTTCAAGCGTCGCAACGACGGGATATACGTGATAAATGTGGGGAAGACGTGGGAGAAGCTGCAGCTGGCGGCTCGGATGATAGTGGCGATAGAGAACCCGCAGGACATAATAGTGCAGTCGGCAAGGCCATACGGGCAGAGGGCGGTTCTGAAGTTCGCGCAGTACACTGGGGCCCACGCCATCGCGGGGAGGCACACGCCGGGGACATTCACGAACCAGCTGCAGACCTCCTTCAGCGAGCCCCGCCTGCTGATCCTGACTGACCCCCGCACGGACCACCAGCCCATCAAGGAGGCCGCCCTCGGCAACATCCCCACCATCGCCTTCTGCGACACCGACTCCCCCATGCGCTACGTCGACATCGCCATCCCCGCCAACAACAAGGGCAAGCACAGCATCGGCTGCCTCTTCTGGCTCCTTGCCCGCATGGTCTTGCAGATGCGCGGCACCATTCGCCCCGGCCTCCAGTGGGATGTCATGGTGGATCTGTTCTTCTACAGGGAACCCGAGGAGACAAAGCAGCTGGAGGAGGATGAAGCCCCAGCAGTCCAAGACTATGCAATTGCAGATTTCAATGCAACTGCTATTGGCGCCATTCCTGCCGATGCCCAGTGGCCTAGTGCAATCGACCAGTCATGGCCCGACACTGTCCCACAACCACCCATTCCCGCTGTTCCTGCTGTTGGTGCCAACTGGGCTGCCCCAGAAGCTGGAGACTGGGGGGACGCTGTTCCACCTCCACAACAAATCCCTGCTCCCGGACTTGAATCTGTCCAAGCTACTGGCTGGGAATGA 933 0.6002 MAATTTTTTAAPARQLSQKEADIQMMLAAEVHLGTKNCDFQMERYIFKRRNDGIYVINVGKTWEKLQLAARMIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIAIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLQWDVMVDLFFYREPEETKQLEEDEAPAVQDYAIADFNATAIGAIPADAQWPSAIDQSWPDTVPQPPIPAVPAVGANWAAPEAGDWGDAVPPPQQIPAPGLESVQATGWE* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3749 310 SUPERFAMILY Ribosomal protein S2 18 208 IPR023591 -
Dod01g3749 310 CDD RPS2 26 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod01g3749 310 PANTHER 40S RIBOSOMAL PROTEIN SA 14 300 IPR005707 GO:0003735|GO:0006412|GO:0015935
Dod01g3749 310 MobiDBLite consensus disorder prediction 276 310 - -
Dod01g3749 310 Hamap 40S ribosomal protein SA [rps-0]. 10 254 IPR027498 GO:0003735|GO:0006412|GO:0015935
Dod01g3749 310 PRINTS Ribosomal protein S2 signature 53 62 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod01g3749 310 PRINTS Ribosomal protein S2 signature 102 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod01g3749 310 PRINTS Ribosomal protein S2 signature 23 41 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod01g3749 310 PRINTS Ribosomal protein S2 signature 127 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod01g3749 310 PRINTS Ribosomal protein S2 signature 165 179 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod01g3749 310 PRINTS Ribosomal protein S2 signature 144 155 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod01g3749 310 Gene3D - 22 228 - -
Dod01g3749 310 PANTHER 40S RIBOSOMAL PROTEIN SA 14 300 - -
Dod01g3749 310 Pfam Ribosomal protein S2 26 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod01g3749 310 Pfam Ribosomal protein S2 125 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dod01g3749 310 ProSitePatterns Ribosomal protein S2 signature 1. 23 34 IPR018130 GO:0003735|GO:0005840|GO:0006412
Dod01g3749 310 TIGRFAM uS2_euk_arch: ribosomal protein uS2 18 214 IPR005707 GO:0003735|GO:0006412|GO:0015935
Dod01g3749 310 ProSitePatterns Ribosomal protein S2 signature 2. 127 151 IPR018130 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3749 Dod-Chr1 79141466 79143607 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3749 9 280 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.088 1.07e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3749 K02998 - gmx:548014 521.161