Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3743 ATGTGCGGAGGTGCTATTATCTCGGACTTCATTCCGGCGGCGGCGGCGGTGAGGGCGAAGTCTCGCCGGCTGACGGCGGATTACCTGTGGCCGGACTTGAAGAAAAGCAGTTCAGGGAAGGCGGTGAGGAGTGAGGTGATCGACCTCGACGACGATTTCGAGGCCGACTTCAGGCAATTCAAGGACGATTCTGACATAGACCGCGACGACGACGATGAGGTGCTCGTCGATGTCAAGCCCTTTGCTTTCACCGCCGCCAAGTCCTCTTCCAAGTCCCGTGGACGTGCTGTAAAACCTGTGGCATTCAAAGGGCAAGCTGAGAAGTGTACAAAAAGAAAGAGGAAGAATCAGTACAGGGGAATCCGTCAGCGTCCTTGGGGTAAATGGGCAGCTGAGATCCGTGATCCAAGAAAGGGGGTTCGTGTCTGGCTTGGAACCTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTACGATGCTGAAGCACGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAGGAGGCTTCGGGTGCTTCCCCAAAACGTTCCAAAGCAATCTTGAACAACTCTGTTCAGCCCAATCTGAGCCACAAGTTCAATGTTGGTAACAATCAGGAGGAGAACCCTCTGGATGTGGTTGAACAGAAACCAGTACTGGTTAACCAGTATCCTAACATTAACATGGACGCCTTCCCTGACATTGGAAATGGGCTCACATCCCTTACCTCACCTGATGATGTGACCCTTTATTTCAGTTCGGATCAGGGCAGCAATTCATTTGATTATTCAGATCTTGGGTGGGGTGAACAGGCCCCAAAGACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGAAGGTGAATCCCATTTTGTGAAAGATGCCAATCAACAGAAAAACTTGCAGTCCAACTCTCACAATGTGGTACCTACGCAGGATGATTCTGCAAAGACACTGTCAGAGGAGCTTGTTGATATTGAGTCCGATTTGAAATTCTTTCAGATGCCTTTTCTTGAAGGGAACTGGGATGATGATACTTCATTTGAATCCTTGCTAGCTGGAGACACTACCCAGGATGGTGGAAACCTGATGAACCTTTGGACCTTTGATGACATTCCTTCCATGGCTGGTGGAGTATTCTGA 1149 0.4987 MCGGAIISDFIPAAAAVRAKSRRLTADYLWPDLKKSSSGKAVRSEVIDLDDDFEADFRQFKDDSDIDRDDDDEVLVDVKPFAFTAAKSSSKSRGRAVKPVAFKGQAEKCTKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPEEASGASPKRSKAILNNSVQPNLSHKFNVGNNQEENPLDVVEQKPVLVNQYPNINMDAFPDIGNGLTSLTSPDDVTLYFSSDQGSNSFDYSDLGWGEQAPKTPEISSMLSAPLEGESHFVKDANQQKNLQSNSHNVVPTQDDSAKTLSEELVDIESDLKFFQMPFLEGNWDDDTSFESLLAGDTTQDGGNLMNLWTFDDIPSMAGGVF* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3743 382 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Dod01g3743 382 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Dod01g3743 382 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Dod01g3743 382 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Dod01g3743 382 PANTHER DNA-BINDING DOMAIN 1 375 IPR044808 GO:0003700|GO:0009873
Dod01g3743 382 CDD AP2 117 175 IPR001471 GO:0003700|GO:0006355
Dod01g3743 382 Gene3D AP2/ERF domain 116 176 IPR036955 GO:0003700|GO:0006355
Dod01g3743 382 PANTHER EREBP TRANSCRIPTION FACTOR 1 375 - -
Dod01g3743 382 SUPERFAMILY DNA-binding domain 117 175 IPR016177 GO:0003677
Dod01g3743 382 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3743 Dod-Chr1 79095899 79097791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3743 1 382 AP2-EREBP Transcription Factor Family AT3G14230 47.242 1.21e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod01g3743 AP2 4.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3743 K09286 - gmx:100170723 449.514