Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3731 ATGTTCTTGGGTGATGGAAGTAGAAACACCATCATCACAGCAAGTAGAAATGTTGTTGATGGCAGCACAACCTTTAACTCTGCCACAGTGGAAGCCGGTGGTGATGAGGCTACTACAGTGTCAATTCGTGGATCCAAGTGGATGGTGGTTCGAGGTTCAGAAGCAGTGGGTGCAGTGGTGTACACGGCGTGGACGGACATCAGAGACTTGAGCCTGACCAACATGATGGTGGCTCATGATGCTTCGATATGGGTGAAGGATTCTTGGCACGAGGCATATCGTTCGAGAACTCAGCAGGTCCCTCAAAGCACCAAGCAGTGGCCCTTCGAGTGGGGTCGGACCTGGCATGCCTTCTACTTGTGCGGCTTCTCGGCGTTCCAAGACACGCTCTACGTCCACTCCAACCGCCAGTTCTTCGTGAAGTGCTTCATCGCAGGCACTATCGACTTCATCTTCGGCAACTCGGCTGCGGTGTTCCAAGACTGCGACATCCACGCCAGGCGCCCCAATCCGGGTCAGAAGAACATGGTCACCGCACAAGGGCGCGTTGACCCAAACCAGAACACCGGCATTGTCATCCAGAAGTGCAGGATTGGCGCCACCGCTGACCTGGAGCCTGTGAAGGGCAGCTTCCCCACGTATCTTGGGAGGCCTTGGAAGGAGTACTCGAGGACCGTGGTCATGCAGTCGACCATCGGTGATGTGATTCACCCTGCTGGCTGGTTTGAGTGGGATGGCGACTTCGCGCTCAACACCCTCTTCTATGGGGAGTACGCCAACACTGGGCCCGGTGCTGACACCTCTCGCAGGGTTAACTGGAGGGGCTTTCGGGTCATTACCAGTGCTTCCGAAGCCCGGGCTTTTACTGCCGCCAATTTCATTGCAGGTTCTGGCTGGTTGGGTTCTACTGGCTTTCCTCACTCTCTCGGCCTGTTATTTGCTCGTACAGTCGTAGATTTAAGTTTATATGCGTTGACTGGAGCTTGTGCTCTCCATTTTGGATAA 1005 0.5473 MFLGDGSRNTIITASRNVVDGSTTFNSATVEAGGDEATTVSIRGSKWMVVRGSEAVGAVVYTAWTDIRDLSLTNMMVAHDASIWVKDSWHEAYRSRTQQVPQSTKQWPFEWGRTWHAFYLCGFSAFQDTLYVHSNRQFFVKCFIAGTIDFIFGNSAAVFQDCDIHARRPNPGQKNMVTAQGRVDPNQNTGIVIQKCRIGATADLEPVKGSFPTYLGRPWKEYSRTVVMQSTIGDVIHPAGWFEWDGDFALNTLFYGEYANTGPGADTSRRVNWRGFRVITSASEARAFTAANFIAGSGWLGSTGFPHSLGLLFARTVVDLSLYALTGACALHFG* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3731 334 Pfam Pectinesterase 117 296 IPR000070 GO:0030599|GO:0042545
Dod01g3731 334 Pfam Pectinesterase 1 43 IPR000070 GO:0030599|GO:0042545
Dod01g3731 334 PANTHER PECTINESTERASE 1 36 - -
Dod01g3731 334 PANTHER PECTINESTERASE 116 310 - -
Dod01g3731 334 Gene3D - 1 311 IPR012334 -
Dod01g3731 334 PANTHER PECTINESTERASE 1 36 - -
Dod01g3731 334 PANTHER PECTINESTERASE 116 310 - -
Dod01g3731 334 ProSitePatterns Pectinesterase signature 2. 144 153 IPR033131 -
Dod01g3731 334 SUPERFAMILY Pectin lyase-like 116 310 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3731 Dod-Chr1 78960940 78965164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3731 1 311 Carbohydrate Esterase AT3G14310 59.486 5.37e-122 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3731 K01051 - vvi:104880619 362.459